SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158287

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene158287
TCCATCGCCGATAAGGTCGACTACGCCTATGGCCTCTTCGAGAAGGAAGTTAAGGTCGATACCATCTTCAATGAGAGCGAAAACATTGATGTCATTGGTGTTACCAAGGGTCACGGTTACGAGGGTGTCACCACCCGTTGGGGAACCACACGCTTGCCCAGAAAGACACACAAGGGTCTCCGCAAGGTCGCTTGTATTGGTGCCTGGCATCCTAGCAGAGTGTCCTTCACTG

Ace file of the UniGene sp_v3.0_unigene158287

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L3 [Solanum lycopersicum]	-	-	2.0e-30	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Ribosomal protein L3	-	-	1.138e-21	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00010223001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g00490; PHATR_13361;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61580.1	RPL3B, ARP2 R-protein L3 B chr1:22720833-22722402 REVERSE LENGTH=390	1.0e-36	77%
RefSeq	Arabidopsis thaliana	NP_176352.1	60S ribosomal protein L3-2 [Arabidopsis thaliana]	1.0e-36	77%
RefSeq	Populus trichocarpa	XP_002306708.1	predicted protein [Populus trichocarpa]	3.0e-38	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 77 - 389

Fln protein: SIADKVDYAYGLFEKEVKVDTIFNESENIDVIGVTKGHGYEGVTTRWGTTRLPRKTHKGLRKVACIGAWHPSRVSFT

Protein Length: 78

Fln nts: TCCATCGCCGATAAGGTCGACTACGCCTATGGCCTCTTCGAGAAGGAAGTTAAGGTCGATACCATCTTCAATGAGAGCGAAAACATTGATGTCATTGGTGTTACCAAGGGTCACGGTTACGAGGGTGTCACCACCCGTTGGGGAACCACACGCTTGCCCAGAAAGACACACAAGGGTCTCCGCAAGGTCGCTTGTATTGGTGCCTGGCATCCTAGCAGAGTGTCCTTCACTG

Fln Alignment:

HLKU4M004JFLF6___SIADKVDYAYGLFEKEVKVDTIFNESENIDVIGVTKGHGYEGVTTRWGTTRLPRKTHKGLRKVACIGAWHPSRVSFT
A9NZI7________________TVAQKVDYAYNFFEKQVPIDALFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain