SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158236

Length: 305 nt

UniGene Fasta

>sp_v3.0_unigene158236
AAAGCAACTCAAATTCTCTTTGGTTGGTATTGCAGGACAAGACATCAATGCTGGAAACAAGAAACTGACTCTTGCTCTTGTCTGGCAAATGCTCAGATACTACATAGTAAACTACTTGAAGAAGCTCTCTAAGGGAGGAAAAGAAATCACTGATGAGGATATTGTTCAATGGGCCAACGACAAAGTCAGATCATCAGGAAAATCAACTACCATGGAATCCTTCAAGGACAAATCACTCTCTGATTCACTGTTCATTATGGATTTGCTCCACGCTTGCCAACCAGACTCAGTAGACTATAGCTTGG

Ace file of the UniGene sp_v3.0_unigene158236

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fimbrin-like protein AtFim2 [Arabidopsis thaliana]	-	-	2.0e-26	60%
FL-Next	sp=Fimbrin-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Sma3	Fimbrin, putative	-	-	2.505e-08	-

Source	Gene names
Sma3	AT4G26700; At4g26700; At5g35700; At5g48460; At5g55400; B1075D06.5; F10M23.40; FIM1; FIM2; FIM3; GSVIVT00010397001; GSVIVT00025868001; GSVIVT00027232001; MTE17.11; MXH1.5; OJ1008_D06.3; OJ2056_H01.36; OSJNBb0046O12.16; OSJNBb0056I22.56; Os01g0514600; Os02g

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48460.1	Actin binding Calponin homology (CH) domain-containing protein chr5:19636225-19639365 REVERSE LENGTH=654	1.0e-32	60%
RefSeq	Arabidopsis thaliana	NP_199657.1	Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]	2.0e-32	60%
RefSeq	Populus trichocarpa	XP_002301825.1	predicted protein [Populus trichocarpa]	9.0e-33	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G188

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 101 - 687

Fln protein: KQLKFSLVGIAGQDINAGNKKLTLALVWQMLRYYIVNYLKKLSKGGKEITDEDIVQWANDKVRSSGKSTTMESFKDKSLSDSLFIMDLLHACQPDSVDYSL

Protein Length: 102

Fln nts: AAAGCAACTCAAATTCTCTTTGGTTGGTATTGCAGGACAAGACATCAATGCTGGAAACAAGAAACTGACTCTTGCTCTTGTCTGGCAAATGCTCAGATACTACATAGTAAACTACTTGAAGAAGCTCTCTAAGGGAGGAAAAGAAATCACTGATGAGGATATTGTTCAATGGGCCAACGACAAAGTCAGATCATCAGGAAAATCAACTACCATGGAATCCTTCAAGGACAAATCACTCTCTGATTCACTGTTCATTATGGATTTGCTCCACGCTTGCCAACCAGACTCAGTAGACTATAGCTTGG

Fln Alignment:

HLKU4M004JIS19___KQLKFSLVGIAGQDINAGNKKLTLALVWQMLRYYIVNYLKKLSKG--GKEITDEDIVQWANDKVRSSGKSTTMESFKDKSLSDSLFIMDLLHACQPDSVDYSL
Q7G188________________KQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain