SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158101

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene158101
ACTACCACCAAGCACTACACCGTCATCGATGCCCCTGGACATCGTAACTTTATCAAGAACATGATCACTGGTGCCTCTCAAGCCGATGTCGCCCTCCTCATGGTCCCCGCTGACGGTAACTTTACCACCGCCATTGCCCGTGGTAACGCCAAGGCTGGTGAAGTCCAAGGACAAACCCGTCAACACGCCCTCTTGATCAACTTGCTCGGAGTCAAGCAATTGCTTGTTGGAGTTAACAAGATGGATGCCGATCTTGCTGGTTACAAG

Ace file of the UniGene sp_v3.0_unigene158101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	elongation factor 1 alpha long form [Monosiga brevicollis]	-	-	8.0e-38	87%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Translation elongation factor-like protein	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein-synthesizing GTPase.	EC:3.6.5.3	-	3.166e-06	-

Source	Gene names
Sma3	CHLREDRAFT_132905; CHLREDRAFT_134382; EEF1; EF-1; EF-1alpha; EF1-alpha; EF1A; EF1A1; EF1A2; EF1A3; EFL; EFL1; EFL2; MICPUCDRAFT_33445; MICPUCDRAFT_49684; MICPUN_91047; MICPUN_91112; OSTLU_27060; OSTLU_27198; OSTLU_29711; Ot13g00910; Ot13g02380; PHATRDRAFT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	2.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_001077483.1	Elongation factor 1-alpha [Arabidopsis thaliana]	9.0e-21	55%
RefSeq	Populus trichocarpa	XP_002337967.1	predicted protein, partial [Populus trichocarpa]	1.0e-20	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSF0

Fln msg: Distance to subject end: 285 aas, your sequence is shorter than subject: 89 - 448

Fln protein: TTTKHYTVIDAPGHRNFIKNMITGASQADVALLMVPADGNFTTAIARGNAKAGEVQGQTRQHALLINLLGVKQLLVGVNKMDADLAGYK

Protein Length: 90

Fln nts: ACTACCACCAAGCACTACACCGTCATCGATGCCCCTGGACATCGTAACTTTATCAAGAACATGATCACTGGTGCCTCTCAAGCCGATGTCGCCCTCCTCATGGTCCCCGCTGACGGTAACTTTACCACCGCCATTGCCCGTGGTAACGCCAAGGCTGGTGAAGTCCAAGGACAAACCCGTCAACACGCCCTCTTGATCAACTTGCTCGGAGTCAAGCAATTGCTTGTTGGAGTTAACAAGATGGATGCCGATCTTGCTGGTTACAAG

Fln Alignment:

HLKU4M004JTAQO___TTKHY-TVIDAPGHRNFIKNMITGASQADVALLMVPA-DGNFTTAIARGNAKAGEVQGQTRQHALLINLLGVKQLLVGVNKMDADLAGY
C0PSF0________________TTKYYCTVIDAPGHRDFIKNMITGTSQADCAILIIDSTTGGFEAGISK--------DGQTREHALLAFTLGVRQMICCCNKMDATTPKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain