SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158085

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene158085
ACACGGTCCGTGCCTATCATCCAAGGCATCATCAAGTACTGGCCGTGGTCGTGCTCGTCCAAGCAGGTGATCTTCCTCAACGAGCTGGAAGAGATCTTGGAACTCATGGGCTCGGAGCAGCTCCAGCAAGTGCACAAGCCTCTGTTCTTGGCATTGGCCAAGTGGCTGGGCAGCCAGCACTTCCAGGTCTCGGAGCGAACGCTGTTCTTGTGGAACAACGAGCACCTCGTGAACAATGGCTGCCTGAGCAAGCAGCACGCGCATTTGATTCTGCCCGTGATCTACGGTCCGTTGCACAAGAACTCGATGGGCCACTGGAACACGACGGTCGAAGGCTTGGCGCAGAATGTGTTGAAGCTGTACATGGACTACGATATGGCTCTGTATGACCAGTGCGCGAAGG

Ace file of the UniGene sp_v3.0_unigene158085

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2A regulatory B subunit, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N579_PHYIT	-	-	0.0	87%
FL-Next	sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Sma3	Protein phosphatase 2a, regulatory subunit, putative	-	-	1.597e-11	-

Source	Gene names
Sma3	AT3G26020; At1g13460; At3g26020; B'ETA; B'THETA; B'zeta; B1029H08.25; CHLREDRAFT_127638; GSVIVT00020577001; GSVIVT00025928001; GSVIVT00035107001; H0805A05.14; LOC_Os03g62730; MPE11.19; OJ000223_09.6; OSJNBa0032G11.16; OSJNBa0081L15.16; OSTLU_35344; Os03g0

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	0.0	-
Sma3	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301608.1	predicted protein [Populus trichocarpa]	2.0e-30	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SV41

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 134 - 497

Fln protein: TRSVPIIQGIIKYWPWSCSSKQVIFLNELEEILELMGSEQLQQVHKPLFLALAKWLGSQHFQVSERTLFLWNNEHLVNNGCLSKQHAHLILPVIYGPLHKNSMGHWNTTVEGLAQNVLKLYMDYDMALYDQCAK

Protein Length: 135

Fln nts: ACACGGTCCGTGCCTATCATCCAAGGCATCATCAAGTACTGGCCGTGGTCGTGCTCGTCCAAGCAGGTGATCTTCCTCAACGAGCTGGAAGAGATCTTGGAACTCATGGGCTCGGAGCAGCTCCAGCAAGTGCACAAGCCTCTGTTCTTGGCATTGGCCAAGTGGCTGGGCAGCCAGCACTTCCAGGTCTCGGAGCGAACGCTGTTCTTGTGGAACAACGAGCACCTCGTGAACAATGGCTGCCTGAGCAAGCAGCACGCGCATTTGATTCTGCCCGTGATCTACGGTCCGTTGCACAAGAACTCGATGGGCCACTGGAACACGACGGTCGAAGGCTTGGCGCAGAATGTGTTGAAGCTGTACATGGACTACGATATGGCTCTGTATGACCAGTGCGCGAAGG

Fln Alignment:

HLKU4M004I0MQP___IIQGIIKYWPWSCSSKQVIFXXXXXXXXXXMGSEQLQQVHKPLFLALAKWLGSQHFQVSERTLFLWNNEHLVNNGCLSKQHAHLILPVIYGPLHKNSMGHWNTTVEGLAQNVLKLYMDYDMALYDQCAK
Q9SV41________________VIRGLLKFWPLTNCQKEVLFLGELEEVLDATEPSEFQQCVVPLFTQIGKCLNSAHFQVAERALFLWNNEHIVG---LIAQNKDVIFPIIFEALERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain