SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158004

Length: 319 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene158004
AACAAGAGAGGAGAAGTGTTCTCCCAAGAACAATTGGTCGGAGAGCTCTACGTCATGAAGGGATACTTGCCTGTGCTCGAATCCTTCGGTTTCTCCTCATTCATCCGTGAACACACTGCTGGTCAAGCCTCCCCACAACTCTCCTTTGACCACTGGCAAGTTGTCGATGGTGATCCTTTTGACCCAGCCACTCCAGCCGGAAAGATCGTCGCCGCCACAAGAAAGCGTAAGGATCTCGCTGCTAAGATTCCCGGACTCGATGAATATATCGATAGATTGTAAATTGTGGCCAAATATCTTAATATTCCTCCTATTAGTC

Ace file of the UniGene sp_v3.0_unigene158004 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 2 n=3 Tax=Schizosaccharomyces RepID=EF2_SCHPO	-	-	4.0e-22	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	AT1G56070; At1g56070; At1g56070/T6H22.13; At1g56075; MICPUN_112653; PHYPADRAFT_109208; PHYPADRAFT_227610; T6H22.13;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56070.1	LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein chr1:20968245-20971077 REVERSE LENGTH=843	1.0e-22	51%
RefSeq	Arabidopsis thaliana	NP_849818.1	elongation factor EF-2 [Arabidopsis thaliana]	1.0e-22	51%
RefSeq	Populus trichocarpa	XP_002336546.1	predicted protein [Populus trichocarpa]	4.0e-22	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is shorter than subject: 94 - 267

Fln protein: NKRGEVFSQEQLVGELYVMKGYLPVLESFGFSSFIREHTAGQASPQLSFDHWQVVDGDPFDPATPAGKIVAATRKRKDLAAKIPGLDEYIDRL*

Protein Length: 95

Fln nts: AACAAGAGAGGAGAAGTGTTCTCCCAAGAACAATTGGTCGGAGAGCTCTACGTCATGAAGGGATACTTGCCTGTGCTCGAATCCTTCGGTTTCTCCTCATTCATCCGTGAACACACTGCTGGTCAAGCCTCCCCACAACTCTCCTTTGACCACTGGCAAGTTGTCGATGGTGATCCTTTTGACCCAGCCACTCCAGCCGGAAAGATCGTCGCCGCCACAAGAAAGCGTAAGGATCTCGCTGCTAAGATTCCCGGACTCGATGAATATATCGATAGATTGTAA___ATTGTGGCCAAATATCTTAATATTCCTCCTATTAGTC

Fln Alignment:

HLKU4M004IQYGG___KRGEVFSQEQLVGE-LYVMKGYLPVLESFGFSSFIREHTAGQASPQLSFDHWQVVDGDPFDPATPAGKIVAATRKRKDLAAKIPGLDEYIDRL
D5ACX5________________KRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQAGQLVTDIRKRKGLKESMTPLSDFEDKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain