SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157983

Length: 292 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene157983
ACCTGGGCGAGAAGCTGACGGACGAGGAGGTCGATGAGATGATCCGGGAAGCTGATATCGACGGTGACGGACAGATTAACTACGAGGAGTTCGTCAAGATGATGATGTCCAATTAAGTAGTGCAAGTTATTAGTGCATTAGTTCGATTCCCGAAATCTCCCGGCGACCGGTCTCATTGCAAGACCGAAGTCGCCATGTTCGTCAATATCACGCACTTTGCTGCGCGTGGCTGTCTTGATACCTCTCTGTAAAGCTTTCAGTCCCTCTTCATAAATATTCGATATTATAGCTC

Ace file of the UniGene sp_v3.0_unigene157983 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0X1N7_9STRA	-	-	7.0e-13	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Calmodulin	-	-	2.96e-19	-

Source	Gene names
Sma3	At2g27030; At2g41110; At3g22930; At3g43810; At3g56800; At4g14640; At5g21274; CAL1; CALM1; CAM; CAM-1; CAM-11; CAM-16; CAM-2; CAM1; CAM1-1; CAM1-2; CAM1-3; CAM2; CAM3; CAM5; CAM53; CAM6; CAM7; CAM72; CAM8; CAM81; CCM1; CHLREDRAFT_188144; CMD1; CML11; CML5;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-
Sma3	calcium-mediated signaling	GO:0019722	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G43810.1	CAM7 calmodulin 7 chr3:15664619-15666355 REVERSE LENGTH=149	8.0e-17	91%
RefSeq	Arabidopsis thaliana	NP_189967.1	calmodulin 7 [Arabidopsis thaliana]	1.0e-16	91%
RefSeq	Populus trichocarpa	XP_002314234.1	predicted protein [Populus trichocarpa]	1.0e-16	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPT3

Fln msg: your sequence is shorter than subject: 38 - 149

Fln protein: LGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSN*

Protein Length: 39

Fln nts: ACCTGGGCGAGAAGCTGACGGACGAGGAGGTCGATGAGATGATCCGGGAAGCTGATATCGACGGTGACGGACAGATTAACTACGAGGAGTTCGTCAAGATGATGATGTCCAATTAA___GTAGTGCAAGTTATTAGTGCATTAGTTCGATTCCCGAAATCTCCCGGCGACCGGTCTCATTGCAAGACCGAAGTCGCCATGTTCGTCAATATCACGCACTTTGCTGCGCGTGGCTGTCTTGATACCTCTCTGTAAAGCTTTCAGTCCCTCTTCATAAATATTCGATATTATAGCTC

Fln Alignment:

HLKU4M004H1I0E___LGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMS
A9NPT3________________LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain