SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157980

Length: 160 nt

UniGene Fasta

>sp_v3.0_unigene157980
CACGGACCCTCCAATACTCCTTACGAAGGTGGTGTTTTCAATGCTGAACTTTTGTTGACTGATGAATACCCCATGAATCCCCCTAAGGTCGTCTTCAACACCAAGATCTATCACCCCAATATTGATAACCTCGGCAGAATTTGCCTTGATATCCTTAAAG

Ace file of the UniGene sp_v3.0_unigene157980

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=3 Tax=Paramecium tetraurelia RepID=A0CVX3_PARTE	-	-	3.0e-20	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Ubiquitin carrier protein	-	-	3.555e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	3.824e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		3.824e-17	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		3.824e-17	%

Source	Gene names
Sma3	At1g16890; At1g78870; CHLREDRAFT_129070; F17F16.19; F6I1.11; F9K20.8; GSVIVT00027804001; MICPUCDRAFT_46797; MICPUN_106902; OSTLU_38691; Os01g0673600; OsI_03230; OsJ_02975; Ot05g02630; P0007F06.32; P0485G01.22; PHATRDRAFT_36198; PHYPADRAFT_106208; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	UBC13-MMS2 complex	GO:0031372	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16890.3	-	3.0e-22	75%
RefSeq	Arabidopsis thaliana	NP_001031298.1	ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana]	1.0e-22	75%
RefSeq	Populus trichocarpa	XP_002330723.1	predicted protein [Populus trichocarpa]	3.0e-22	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNB1

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 53 - 153

Fln protein: HGPSNTPYEGGVFNAELLLTDEYPMNPPKVVFNTKIYHPNIDNLGRICLDILK

Protein Length: 54

Fln nts: CACGGACCCTCCAATACTCCTTACGAAGGTGGTGTTTTCAATGCTGAACTTTTGTTGACTGATGAATACCCCATGAATCCCCCTAAGGTCGTCTTCAACACCAAGATCTATCACCCCAATATTGATAACCTCGGCAGAATTTGCCTTGATATCCTTAAAG

Fln Alignment:

HLKU4M004JTUM2___GPSNTPYEGGVFNAELLLTDEYPMNPPKVVFNTKIYHPNIDNLGRICLDILK
A9NNB1________________GPSQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain