SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157955

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene157955
GAAGAAGAAGGCCTACACCACTCCCAAGAAAATCAAGCACAAGCGCAAGAAGGTCTCCAAGTCCATCTTGAAGTACTACCGCGTCGATGACAATGGCAAGATTACTCGCTTGCGTCAAGAATGCAGTGCTGAAAGCTGTGGTGCTGGTATTTTCATGGCCAAGCACGCTGACCGTGAATACTGCGGTAAGTGCCACTTGACCATTCGTGCCAAGGC

Ace file of the UniGene sp_v3.0_unigene157955

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-like family 1 n=1 Tax=Prionchulus punctatus RepID=E2EKI8_9BILA	-	-	4.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	At1g23410; At2g47110; At3g62250; CHLREDRAFT_142065; F14M4.6; F26F24.28; F28C11.5; GSVIVT00006610001; GSVIVT00027151001; GSVIVT00028185001; MICPUCDRAFT_51948; MICPUN_90428; MUB1; MUB2; OSTLU_32483; Os01g0328400; Os05g0160200; OsI_01687; OsI_01691; OsJ_0155

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Ribosomal protein S27a	IPR002906	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47110.1	UBQ6 ubiquitin 6 chr2:19344701-19345174 FORWARD LENGTH=157	5.0e-15	62%
RefSeq	Arabidopsis thaliana	NP_001189768.1	ubiquitin-40S ribosomal protein S27a-2 [Arabidopsis thaliana]	7.0e-15	62%
RefSeq	Populus trichocarpa	XP_002297752.1	predicted protein [Populus trichocarpa]	1.0e-15	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKJ2

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 71 - 156

Fln protein: KKKAYTTPKKIKHKRKKVSKSILKYYRVDDNGKITRLRQECSAESCGAGIFMAKHADREYCGKCHLTIRAK

Protein Length: 72

Fln nts: GAAGAAGAAGGCCTACACCACTCCCAAGAAAATCAAGCACAAGCGCAAGAAGGTCTCCAAGTCCATCTTGAAGTACTACCGCGTCGATGACAATGGCAAGATTACTCGCTTGCGTCAAGAATGCAGTGCTGAAAGCTGTGGTGCTGGTATTTTCATGGCCAAGCACGCTGACCGTGAATACTGCGGTAAGTGCCACTTGACCATTCGTGCCAAGGC

Fln Alignment:

HLKU4M004JL1LN___YYRVDDNGKITRLRQECSAESCGAGIFMAKHADREYCGKCHLT
B8LKJ2________________YYKVDDSGKVQRLRKECPNQDCGAGTFMANHFDRHYCGKCGLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain