SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157949

Length: 574 nt

UniGene Fasta

>sp_v3.0_unigene157949
ATCCAAGTCAACGGAGGTTCCATCGCCGACAAGGTCGACTACGCCTACGGACTTTTCGAGAAGACTGTCCCCGTCACCGCTCTCTTCGAAGAAAGCGAACAAATCGACGTCATTGGTGTCACCAAGGGAAAGGGATTCGAGGGTGTTACTGCTCGTTGGGGAACTACCCGCCTTCCAAGAAAGACTCACAAGGGTCTCCGCAAGGTTGCTTGTATTGGAGCCTGGCATCCAAGCAGAGTCTCGTTCACCGTCCCAAGAGCCGGTCAGAACGGTTACCATCATAGAACTGAGATGAACAAAAAGATCTACCGCATTGGAAACGGATCCGACCCCAAGAGCGGATCTACTGAGACCGATCTTACCGAGAAGACCATCAACCCGATGGGTGGCTTCCCTCACTACGGTTTGGTCAAGGGCGACTTCATCGTCATCAAGGGTTGCTGCATGGGTGTCAAGAAGAGAGTCCTCACCCTCCGCAAGTCCATTGTTCCCCAAACAAGTCGTACCGCTCTCGAGAAGATCAAGCTCAAGTGGATCGATACCTCATCCAAGTTTGGACACGGTAGATTCCAAA

Ace file of the UniGene sp_v3.0_unigene157949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L3 n=17 Tax=Poaceae RepID=RL3_ORYSJ	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Ribosomal protein L3	-	-	1.075e-17	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; Csf-3; EMB2207; GSVIVT00010223001; GSVIVT00019342001; GSVIVT00031743001; GSVIVT00035280001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L3	IPR000597	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Ribosomal protein L11, bacterial-type	IPR006519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G43170.1	ARP1, emb2207, RPL3A, RP1 ribosomal protein 1 chr1:16266992-16268631 FORWARD LENGTH=389	70%
RefSeq	Arabidopsis thaliana	NP_001077671.1	60S ribosomal protein L3-1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002306708.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRB1

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 191 - 389

Fln protein: IQVNGGSIADKVDYAYGLFEKTVPVTALFEESEQIDVIGVTKGKGFEGVTARWGTTRLPRKTHKGLRKVACIGAWHPSRVSFTVPRAGQNGYHHRTEMNKKIYRIGNGSDPKSGSTETDLTEKTINPMGGFPHYGLVKGDFIVIKGCCMGVKKRVLTLRKSIVPQTSRTALEKIKLKWIDTSSKFGHGRFQ

Protein Length: 192

Fln nts: ATCCAAGTCAACGGAGGTTCCATCGCCGACAAGGTCGACTACGCCTACGGACTTTTCGAGAAGACTGTCCCCGTCACCGCTCTCTTCGAAGAAAGCGAACAAATCGACGTCATTGGTGTCACCAAGGGAAAGGGATTCGAGGGTGTTACTGCTCGTTGGGGAACTACCCGCCTTCCAAGAAAGACTCACAAGGGTCTCCGCAAGGTTGCTTGTATTGGAGCCTGGCATCCAAGCAGAGTCTCGTTCACCGTCCCAAGAGCCGGTCAGAACGGTTACCATCATAGAACTGAGATGAACAAAAAGATCTACCGCATTGGAAACGGATCCGACCCCAAGAGCGGATCTACTGAGACCGATCTTACCGAGAAGACCATCAACCCGATGGGTGGCTTCCCTCACTACGGTTTGGTCAAGGGCGACTTCATCGTCATCAAGGGTTGCTGCATGGGTGTCAAGAAGAGAGTCCTCACCCTCCGCAAGTCCATTGTTCCCCAAACAAGTCGTACCGCTCTCGAGAAGATCAAGCTCAAGTGGATCGATACCTCATCCAAGTTTGGACACGGTAGATTCCAAA

Fln Alignment:

HLKU4M004I8UEG___IQVNGGSIADKVDYAYGLFEKTVPVTALFEESEQIDVIGVTKGKGFEGVTARWGTTRLPRKTHKGLRKVACIGAWHPSRVSFTVPRAGQNGYHHRTEMNKKIYRIG-NGSDPKSGSTETDLTEKTINPMGGFPHYGLVKGDFIVIKGCCMGVKKRVLTLRKSIVPQTSRTALEKIKLKWIDTSSKFGHGRFQ
A9NRB1________________IQVNGGTVPQKVDYAYNFFEKQVPIDALFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKIGKKDQESHNAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTSSKFGHGRFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain