SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157940

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene157940
CTTGCATCGAATTCGAAGGGGACGAGGAGTCGATTCACACATACAACGAGAGATGAGCGGGATAACTCTACCGAGCTTGACGAATGTCCTCCAGAGCGCGGGCATGGCGGTGCACGGGCATCCGTCGGCACTGCCCGGGAGCACCCAGCTGCCCCCACTTCATCAATTGAACATCTCGTCACAACCCCCCTCCTCGCAGCCTCCCCAGCCCTCACAGCAGTACTCTGAGCCCGCGCAATCGACTGCTGCCAGCGACGATATGGACAGCGACGTGGATCGCACCAAGCACCCGTCGGGCATTGTCCCTACTCTGCAAAACATCGTCTCCACGGTGAATCTGGGGTGCAAGCTCGACCTGAAGAACATCGCGCTGCATGCACGTAACGCCGAGTACAACCCGAAGCGTTTCGCTGCCGTAATCATGAGAATTCGCGAGCCGAAGACGACCGCGCTCA

Ace file of the UniGene sp_v3.0_unigene157940

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TATA-box-binding protein n=1 Tax=Acanthamoeba castellanii RepID=TBP_ACACA	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Transcription initiation factor TFIID TBP-1 subunit	-	-	2.651e-12	-

Source	Gene names
Sma3	At1g55520; At3g13445; CHLREDRAFT_144556; GSVIVT00024845001; GTF1502.1; GTF1502.2; GTF3501; GTF901; GTF902; LOC_Os03g45410; LOC_Os10g29660; LOC_Os12g39070; MICPUCDRAFT_19913; MICPUN_91006; OSTLU_26716; Os03g0657000; Os10g0432300; Os12g0580300; OsI_12863; O

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIID complex	GO:0005669	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TATA-box binding protein	IPR000814	-	0.0	-
Sma3	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G55520.1	TBP2, ATTBP2 TATA binding protein 2 chr1:20726150-20727483 REVERSE LENGTH=200	5.0e-31	93%
RefSeq	Arabidopsis thaliana	NP_849812.1	TATA-box-binding protein 2 [Arabidopsis thaliana]	7.0e-31	93%
RefSeq	Populus trichocarpa	XP_002319167.1	global transcription factor group [Populus trichocarpa]	5.0e-30	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRB0

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 134 - 200

Fln protein: MSGITLPSLTNVLQSAGMAVHGHPSALPGSTQLPPLHQLNISSQPPSSQPPQPSQQYSEPAQSTAASDDMDSDVDRTKHPSGIVPTLQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTAL

Protein Length: 135

Fln nts: CTTGCATCGAATTCGAAGGGGACGAGGAGTCGATTCACACATACAACGAGAG_-_ATGAGCGGGATAACTCTACCGAGCTTGACGAATGTCCTCCAGAGCGCGGGCATGGCGGTGCACGGGCATCCGTCGGCACTGCCCGGGAGCACCCAGCTGCCCCCACTTCATCAATTGAACATCTCGTCACAACCCCCCTCCTCGCAGCCTCCCCAGCCCTCACAGCAGTACTCTGAGCCCGCGCAATCGACTGCTGCCAGCGACGATATGGACAGCGACGTGGATCGCACCAAGCACCCGTCGGGCATTGTCCCTACTCTGCAAAACATCGTCTCCACGGTGAATCTGGGGTGCAAGCTCGACCTGAAGAACATCGCGCTGCATGCACGTAACGCCGAGTACAACCCGAAGCGTTTCGCTGCCGTAATCATGAGAATTCGCGAGCCGAAGACGACCGCGCTCA

Fln Alignment:

HLKU4M004IE4N3___VDRTKHPSGIVPTLQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTAL
C0PRB0________________VDLEKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain