SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157835

Length: 524 nt

UniGene Fasta

>sp_v3.0_unigene157835
TGCTTTGAACATTGATATGAACGAATTCCAAGTCAACTTGGTGCCATATCCCCGTATTCACTTTTTGATGTGCTCGTATGCACCTATCCATTCGCAAGAGGCTGCTTATCACGAGGCCCATACTATTGGTGAATTGACCAATGCCCTCTTTGAGCCTTCCAACATTCTTGCCAAATGTGAGCCTCGACGTGGGAAATACATGGCCGTTTGTATCATGTACCGAGGTGATATCATCCCTAAGGAAGTCACTGCGTCCATTCAAAATATCAAGACCAAGCGTACTATTCAATTTGTCGATTGGTGTCCAACTGGGTTCAAGTGTGGTATTAACAGCCAGGCTCCTTCTGTGGTTCCAGGTGGTGATCTCGCAAAGGTCCCACGTGCTGCTTGCATGTTGGCGAATAGCACTGCCATGGGCGATGTTTTCCGACGCATGGATCAGAAATTCGATCTCATGTATGCTAAACGTGCCTTTGTCCACTGGTACGTCGGTGAAGGTATGGAAGAAGGTGAATTTGCCGAAG

Ace file of the UniGene sp_v3.0_unigene157835

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin alpha-1A chain n=5 Tax=Eukaryota RepID=TBAD_PHYPO	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Alpha-tubulin	-	-	1.958e-21	-

Source	Gene names
Sma3	AT1; AT1G50010; AT5G19780; ATUB3; At1g04820; At1g50010; At1g64740; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; LOC_Os11g14220; MtrDRAFT_AC170580g1v1; OSJN

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14960.2	-	70%
RefSeq	Arabidopsis thaliana	NP_175423.1	tubulin alpha-2/alpha-4 chain [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002313194.1	tubulin alpha-5 chain [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSN4

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 174 - 449

Fln protein: ALNIDMNEFQVNLVPYPRIHFLMCSYAPIHSQEAAYHEAHTIGELTNALFEPSNILAKCEPRRGKYMAVCIMYRGDIIPKEVTASIQNIKTKRTIQFVDWCPTGFKCGINSQAPSVVPGGDLAKVPRAACMLANSTAMGDVFRRMDQKFDLMYAKRAFVHWYVGEGMEEGEFAE

Protein Length: 175

Fln nts: TGCTTTGAACATTGATATGAACGAATTCCAAGTCAACTTGGTGCCATATCCCCGTATTCACTTTTTGATGTGCTCGTATGCACCTATCCATTCGCAAGAGGCTGCTTATCACGAGGCCCATACTATTGGTGAATTGACCAATGCCCTCTTTGAGCCTTCCAACATTCTTGCCAAATGTGAGCCTCGACGTGGGAAATACATGGCCGTTTGTATCATGTACCGAGGTGATATCATCCCTAAGGAAGTCACTGCGTCCATTCAAAATATCAAGACCAAGCGTACTATTCAATTTGTCGATTGGTGTCCAACTGGGTTCAAGTGTGGTATTAACAGCCAGGCTCCTTCTGTGGTTCCAGGTGGTGATCTCGCAAAGGTCCCACGTGCTGCTTGCATGTTGGCGAATAGCACTGCCATGGGCGATGTTTTCCGACGCATGGATCAGAAATTCGATCTCATGTATGCTAAACGTGCCTTTGTCCACTGGTACGTCGGTGAAGGTATGGAAGAAGGTGAATTTGCCGAAG

Fln Alignment:

HLKU4M004ICPZ6___ALNIDMNEFQVNLVPYPRIHFLMCSYAPIHSQEAAYHEAHTIGELTNALFEPSNILAKCEPRRGKYMAVCIMYRGDIIPKEVTASIQNIKTKRTIQFVDWCPTGFKCGINSQAPSVVPGGDLAKVPRAACMLANSTAMGDVFRRMDQKFDLMYAKRAFVHWYVGEGMEEGEFAE
C0PSN4________________AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain