SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157833

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene157833
TCAAATAGATGGGGCGTGTCGTTAGGAGTCAGAGAAAAGGTCATGGTGGAATTTTCAAGTCCCACAACAAACACAGAGTTGGTGCTGCCAAACTGAGAGCACTTGATTTCGGAGAGAGACGCGGTTACATTAAGGGAGTTGTTAGAGAAATCATCCATGATCCTGGTAGAGGCGCCCCACTCGCCAAGGTGTCTTTCAGACACACCTACAGAT

Ace file of the UniGene sp_v3.0_unigene157833

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L8, putative n=4 Tax=Schistosoma RepID=C4QB62_SCHMA	-	-	5.0e-24	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	60S ribosomal protein L2	-	-	1.661e-07	-

Source	Gene names
Sma3	At3g51190; At4g36130; CHLREDRAFT_172406; EMB2296; F23E13.20; F24M12.230; GSVIVT00026101001; GSVIVT00026112001; GSVIVT00027466001; GSVIVT00036802001; LOC_Os12g38000; MICPUCDRAFT_49650; MICPUN_95460; MtrDRAFT_AC159144g11v2; OSTLU_31116; Os12g0567700; OsI_38

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36130.1	Ribosomal protein L2 family chr4:17097613-17098656 FORWARD LENGTH=258	3.0e-31	73%
RefSeq	Arabidopsis thaliana	NP_195336.1	60S ribosomal protein L8-3 [Arabidopsis thaliana]	3.0e-31	73%
RefSeq	Populus trichocarpa	XP_002327761.1	predicted protein [Populus trichocarpa]	3.0e-31	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 68 - 261

Fln protein: MGRVVRSQRKGHGGIFKSHNKHRVGAAKLRALDFGERRGYIKGVVREIIHDPGRGAPLAKVSFRHTYR

Protein Length: 69

Fln nts: TCAAATAG_-_ATGGGGCGTGTCGTTAGGAGTCAGAGAAAAGGTCATGGTGGAATTTTCAAGTCCCACAACAAACACAGAGTTGGTGCTGCCAAACTGAGAGCACTTGATTTCGGAGAGAGACGCGGTTACATTAAGGGAGTTGTTAGAGAAATCATCCATGATCCTGGTAGAGGCGCCCCACTCGCCAAGGTGTCTTTCAGACACACCTACAGAT

Fln Alignment:

HLKU4M004I6AUJ___MGRVVRSQRKGHGGIFKSHNKHRVGAAKLRALDFGERRGYIKGVVREIIHDPGRGAPLAKVSFRHTYR
C0PT38________________MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDYGERNGYIKGIVSDVIHDPGRGAPLCKVTFRHPFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain