SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157820

Length: 538 nt

UniGene Fasta

>sp_v3.0_unigene157820
ACATATTAATACTATATTAATACACGAAATATCTATATTTGGATACATAGTTCAAAATGGGTAGACGTCCAGCTCGTTGCTACAGATACTGCAAGAATAAGCCGTACCCGAAGTCTCGTCACTGTCGTGGTGTGCCGGACCCGAAGATCCGTATCTTCGATTTGGGCCGTAAGAGAGCTAAGGTCGACGAGTTCCCGCTCTGCGTTCACTTGGTCTCGGACGAGTACGAGCAGCTGTCGTCGGAGGCTCTAGAGGCCTCGCGTATCTGCGCCAACAAGTACTTGGTCAAGCACTGCGGTAAAGACGCCTTCCACATTCGTATGCGAGTCCATCCGTTCCACGTGCTCCGCATCAATAAAATGTTGTCGTGCGCAGGCGCCGATCGTCTGCAAACCGGTATGCGTGGTGCCTTTGGCAAGCCGCAGGGTACCGTGGCTCGTGTCAACATCGGTCAGCCGATCATGAGCGTCAGAGCCAAGGACTCCAACAAGGCTCAGGTCATCGAGTCTCTCCGCCGTGCCAAGTTCAAGTTCCCGGG

Ace file of the UniGene sp_v3.0_unigene157820

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L10 n=3 Tax=Branchiostoma RepID=Q86QS5_BRABE	-	-	0.0	88%
FL-Next	sp=60S ribosomal protein L10; Pinus taeda (Loblolly pine).	-	-	0.0	76%
Sma3	60S ribosomal protein L10	-	-	6.009e-14	-

Source	Gene names
Sma3	ACI29; AT1G66580; At1g14320; At1g26910; At1g66580; CHLREDRAFT_195584; F14L17.9; GSVIVT00006249001; GSVIVT00023920001; LOC_Os03g21470; LP20; MICPUCDRAFT_24102; MICPUN_93045; OSTLU_30754; Os03g0332500; OsI_017927; OsI_034350; OsI_11423; OsI_18615; OsJ_10719

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G66580.1	SAG24, RPL10C senescence associated gene 24 chr1:24839208-24840439 FORWARD LENGTH=221	76%
RefSeq	Arabidopsis thaliana	NP_564878.1	60S ribosomal protein L10-3 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002326063.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: O22431

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 160 - 228

Fln protein: MGRRPARCYRYCKNKPYPKSRHCRGVPDPKIRIFDLGRKRAKVDEFPLCVHLVSDEYEQLSSEALEASRICANKYLVKHCGKDAFHIRMRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVNIGQPIMSVRAKDSNKAQVIESLRRAKFKFP

Protein Length: 161

Fln nts: ACATATTAATACTATATTAATACACGAAATATCTATATTTGGATACATAGTTCAAA_-_ATGGGTAGACGTCCAGCTCGTTGCTACAGATACTGCAAGAATAAGCCGTACCCGAAGTCTCGTCACTGTCGTGGTGTGCCGGACCCGAAGATCCGTATCTTCGATTTGGGCCGTAAGAGAGCTAAGGTCGACGAGTTCCCGCTCTGCGTTCACTTGGTCTCGGACGAGTACGAGCAGCTGTCGTCGGAGGCTCTAGAGGCCTCGCGTATCTGCGCCAACAAGTACTTGGTCAAGCACTGCGGTAAAGACGCCTTCCACATTCGTATGCGAGTCCATCCGTTCCACGTGCTCCGCATCAATAAAATGTTGTCGTGCGCAGGCGCCGATCGTCTGCAAACCGGTATGCGTGGTGCCTTTGGCAAGCCGCAGGGTACCGTGGCTCGTGTCAACATCGGTCAGCCGATCATGAGCGTCAGAGCCAAGGACTCCAACAAGGCTCAGGTCATCGAGTCTCTCCGCCGTGCCAAGTTCAAGTTCCCGGG

Fln Alignment:

HLKU4M004IFXW3___MGRRPARCYRYCKNKPYPKSRHCRGVPDPKIRIFDLGRKRAKVDEFPLCVHLVSDEYEQLSSEALEASRICANKYLVKHCGKDAFHIRMRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVNIGQPIMSVRAKDSNKAQVIESLRRAKFKFP
O22431________________MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain