SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157815

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene157815
TTAACTAAGGATGAGGAGCAGGCGTACCGCACCATCAAGACTACAAGATCGAGGATGTCCAAGGCAAGAACTGCCTGACCAACTTCTACGGCATGGACTTCACCACTGACAAGCTCCGCTCTCTTGTCCGCAAGTGGCAGACCCTGATTGAGGCCCACGTTGACGTCAAGACCACTGACGGGTACTACCTCAGGATCTTCACCATTGGG

Ace file of the UniGene sp_v3.0_unigene157815

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3 n=2 Tax=Pucciniales RepID=E3L5E7_PUCGT	-	-	2.0e-21	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	40S ribosomal protein S3a	-	-	7.492e-21	-

Source	Gene names
Sma3	At3g04840; At4g34670; BIS289; CHLREDRAFT_168484; CYC07; GSVIVT00020038001; GSVIVT00031140001; LOC_Os03g10340; MICPUCDRAFT_49648; MICPUN_95475; OJ1115_D03.49; OJ1756_H07.11; OSTLU_28528; Os02g0287000; Os03g0200500; Os12g0406200; OsI_06784; OsI_10409; OsI_3

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Glycoside hydrolase, family 43	IPR006710	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34670.1	Ribosomal protein S3Ae chr4:16548724-16550222 FORWARD LENGTH=262	5.0e-25	81%
RefSeq	Arabidopsis thaliana	NP_195193.1	40S ribosomal protein S3a-2 [Arabidopsis thaliana]	7.0e-25	81%
RefSeq	Populus trichocarpa	XP_002314671.1	predicted protein [Populus trichocarpa]	3.0e-25	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV66

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 24 aas, your sequence is shorter than subject: 69 - 165

Fln protein: N*G*GAGVPHHQDYKIEDVQGKNCLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYYLRIFTIG

Protein Length: 70

Fln nts: TTAACTAAGGATGAGGAGCAGGCGTACCGCACCATCAAGACTACAAGATCGAGGATGTCCAAGGCAAGAACTGCCTGACCAACTTCTACGGCATGGACTTCACCACTGACAAGCTCCGCTCTCTTGTCCGCAAGTGGCAGACCCTGATTGAGGCCCACGTTGACGTCAAGACCACTGACGGGTACTACCTCAGGATCTTCACCATTGGG

Fln Alignment:

HLKU4M004IHAK8___KIEDVQGKNCLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYYLRIFTIG
A9NV66________________RAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain