SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157809

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene157809
GAGGCAGACGCAGAACAAGGGAGAATACTTTGAGAATCCGGAAGAATTTGATCCGGAGCGGTTCGATAAGCGCCGGGAACCATTCTGCTTCATTCCTTTTGGGCAGGGAAACCGGATGTGCCCAGGAAATGAGTTTGCAAGGATAGAAATGGAAGTTTTTCTGTACCACCTTGTTCTAAGATACGACTGGGAATTGGTAGAGCCGAATGAATTGGTTAATATGTATTTCATTCCCAGACCTCTGCATGGGTTGCCTCTGCTCCTCAAACCACCTGCACCTGTGTGATTATCTGAAGCTGTAGCTATTGTAGTG

Ace file of the UniGene sp_v3.0_unigene157809 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Panax notoginseng RepID=F4YF76_9APIA	-	-	2.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	CYP716B1; CYP716B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G36130.1	Cytochrome P450 superfamily protein chr5:14209293-14209811 REVERSE LENGTH=140	9.0e-19	46%
RefSeq	Arabidopsis thaliana	NP_198462.1	Cytochrome P450 family protein [Arabidopsis thaliana]	1.0e-18	46%
RefSeq	Populus trichocarpa	XP_002337611.1	cytochrome P450 [Populus trichocarpa]	1.0e-17	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM27

Fln msg: your sequence is shorter than subject: 95 - 490

Fln protein: RQTQNKGEYFENPEEFDPERFDKRREPFCFIPFGQGNRMCPGNEFARIEMEVFLYHLVLRYDWELVEPNELVNMYFIPRPLHGLPLLLKPPAPV*

Protein Length: 96

Fln nts: GAGGCAGACGCAGAACAAGGGAGAATACTTTGAGAATCCGGAAGAATTTGATCCGGAGCGGTTCGATAAGCGCCGGGAACCATTCTGCTTCATTCCTTTTGGGCAGGGAAACCGGATGTGCCCAGGAAATGAGTTTGCAAGGATAGAAATGGAAGTTTTTCTGTACCACCTTGTTCTAAGATACGACTGGGAATTGGTAGAGCCGAATGAATTGGTTAATATGTATTTCATTCCCAGACCTCTGCATGGGTTGCCTCTGCTCCTCAAACCACCTGCACCTGTGTGA___TTATCTGAAGCTGTAGCTATTGTAGTG

Fln Alignment:

HLKU4M004I8KP0___TQNKGEYFENPEEFDPERFDKRREP-FCFIPFGQGNRMCPGNEFARIEMEVFLYHLVLRYDWELVEPNELVNM
B8LM27________________THKKAEYFENPEEFDPSRFEGAGPPPYTFVPFGGGPRMCPGIEFARIGILVFLHHVVKNFKWNLVDPSEKVIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain