SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157790

Length: 348 nt

UniGene Fasta

>sp_v3.0_unigene157790
TTACAAATGAGTCTCGCATTCTTCTTCTTCCCAGCCTCACAGCCTTCTTGTGCGGTTTTAGCCTTTTTGCTCATCAACAGCATTCCTTTTGATCAACATGTCGTCAACATCATGGCAGGAGAACAGAAACTCCCAGAATTCCTCAAGATCAACCCTTCAGGACAAGTCCCTGCTATAGTAGATAGCGATCTCGTTCTTGCTGAAAGCCACGCTATCCTCAGATACCTTTTCAACAGCCATGACGTCGAAGAATCCTGGTATCCTTATGATGCAAAGCAAAGAGCTCACGTTGACTGGTACCTTGACTGGCATCAATTCAACATCCGCCAATCACATACTACCTTAGAG

Ace file of the UniGene sp_v3.0_unigene157790

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase domain-containing protein n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CC39_9EUKA	-	-	3.0e-23	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Glutathione S-transferase theta-1	-	-	6.335e-06	-

Source	Gene names
Sma3	PHYPADRAFT_222347;

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41210.1	ATGSTT1, GST10, GSTT1 glutathione S-transferase THETA 1 chr5:16492550-16493884 REVERSE LENGTH=245	5.0e-24	45%
RefSeq	Arabidopsis thaliana	NP_198937.1	glutathione S-transferase THETA 1 [Arabidopsis thaliana]	6.0e-24	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A821

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 114 - 248

Fln protein: MSLAFFFFPASQPSCAVLAFLLINSIPFDQHVVNIMAGEQKLPEFLKINPSGQVPAIVDSDLVLAESHAILRYLFNSHDVEESWYPYDAKQRAHVDWYLDWHQFNIRQSHTTLE

Protein Length: 115

Fln nts: TTACAA_-_ATGAGTCTCGCATTCTTCTTCTTCCCAGCCTCACAGCCTTCTTGTGCGGTTTTAGCCTTTTTGCTCATCAACAGCATTCCTTTTGATCAACATGTCGTCAACATCATGGCAGGAGAACAGAAACTCCCAGAATTCCTCAAGATCAACCCTTCAGGACAAGTCCCTGCTATAGTAGATAGCGATCTCGTTCTTGCTGAAAGCCACGCTATCCTCAGATACCTTTTCAACAGCCATGACGTCGAAGAATCCTGGTATCCTTATGATGCAAAGCAAAGAGCTCACGTTGACTGGTACCTTGACTGGCATCAATTCAACATCCGCCAATCACATACTACCTTAGAG

Fln Alignment:

HLKU4M004INY97___SQPSCAVLAFLLINSIPFDQHVVNIMAGEQKLPEFLKINPSGQVPAIVDSDLVLAESHAILRYLFNSHD-VEESWYPYDAKQRAHVDWYLDWHQFNIRQSHTTL
D5A821________________SQPSRAVLIFCMVNKIEFEEHLVNLGKKEHKQPEFRAINPLGLVPTIDDGGFKLFESHAILKYLACAYPRVPDHWYPADLSKRAKIDSVLDWHHSNLRRGSAGL

SSRs (tot: 1)

Start position	End position	Sequence	Length
19	30	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain