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UniGene Name: sp_v3.0_unigene157761
Length: 243 nt
 UniGene Fasta
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| >sp_v3.0_unigene157761
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Ace file of the UniGene sp_v3.0_unigene157761
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
|---|
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bigelowiella natans RepID=Q5YER7_BIGNA | - | - | 2.0e-20 | 85% |
| FL-Next | sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 61% |
| Sma3 | Peptidyl-prolyl cis-trans isomerase | - | - | 0.0 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Peptidylprolyl isomerase. | EC:5.2.1.8 | - | 0.0 | - |
| Source | Gene names |
|---|---|
| Sma3 | 46C02.10; 56B23-g9; At2g15790; At2g16600; At2g21130; At2g29960; At3g55920; At3g62030; At4g38740; At5g13120; At5g58710; CHLREDRAFT_184047; CHLREDRAFT_185571; CHLREDRAFT_34270; CHLREDRAFT_56399; CYC063; CYN19-1; CYN19-4; CYN20-1; CYN20-2; CYN20-3; CYN21; CY |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | extracellular region | GO:0005576 | Cellular Component | 0.0 | - |
| Sma3 | membrane fraction | GO:0005624 | Cellular Component | 0.0 | - |
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | multivesicular body | GO:0005771 | Cellular Component | 0.0 | - |
| Sma3 | endoplasmic reticulum | GO:0005783 | Cellular Component | 0.0 | - |
| Sma3 | Golgi stack | GO:0005795 | Cellular Component | 0.0 | - |
| Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast thylakoid membrane | GO:0009535 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | cytosolic ribosome | GO:0022626 | Cellular Component | 0.0 | - |
| Sma3 | thylakoid lumen | GO:0031977 | Cellular Component | 0.0 | - |
| Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
| Sma3 | peptidyl-prolyl cis-trans isomerase activity | GO:0003755 | Molecular Function | 0.0 | - |
| Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | peptide binding | GO:0042277 | Molecular Function | 0.0 | - |
| Sma3 | protein folding | GO:0006457 | Biological Process | 0.0 | - |
| Sma3 | response to oxidative stress | GO:0006979 | Biological Process | 0.0 | - |
| Sma3 | plant-type hypersensitive response | GO:0009626 | Biological Process | 0.0 | - |
| Sma3 | response to light intensity | GO:0009642 | Biological Process | 0.0 | - |
| Sma3 | response to salt stress | GO:0009651 | Biological Process | 0.0 | - |
| Sma3 | vegetative phase change | GO:0010050 | Biological Process | 0.0 | - |
| Sma3 | response to mannitol stimulus | GO:0010555 | Biological Process | 0.0 | - |
| Sma3 | floral meristem determinacy | GO:0010582 | Biological Process | 0.0 | - |
| Sma3 | cysteine biosynthetic process | GO:0019344 | Biological Process | 0.0 | - |
| Sma3 | defense response to bacterium | GO:0042742 | Biological Process | 0.0 | - |
| Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain | IPR001179 | - | 0.0 | - |
| Sma3 | Tetratricopeptide TPR-1 | IPR001440 | - | 0.0 | - |
| Sma3 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain | IPR002130 | - | 0.0 | - |
| Sma3 | Tetratricopeptide-like helical | IPR011990 | - | 0.0 | - |
| Sma3 | Tetratricopeptide repeat-containing domain | IPR013026 | - | 0.0 | - |
| Sma3 | Tetratricopeptide repeat | IPR019734 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT2G29960.1 | CYP5, ATCYP5, CYP19-4 cyclophilin 5 chr2:12769183-12770528 REVERSE LENGTH=201 | 1.0e-20 | 57% |
| RefSeq | Arabidopsis thaliana | NP_001077978.1 | Peptidyl-prolyl cis-trans isomerase CYP19-4 [Arabidopsis thaliana] | 1.0e-20 | 57% |
| RefSeq | Populus trichocarpa | XP_002298312.1 | isomerase peptidyl-prolyl cis-trans isomerase [Populus trichocarpa] | 7.0e-20 | 55% |
| Full-Lengther Next Prediction |
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Fln status: N-terminus
Fln database: coniferopsida.fasta
Fln subject: A9NK21
Fln msg: Distance to subject end: 124 aas, atg_distance in limit (1-15): atg_distance = 3, your sequence is shorter than subject: 73 - 204
Fln protein:
M
Protein Length:
74
Fln nts:
T
Fln Alignment:
HLKU4M004JUF0K___LVIIAVIFFLSAFGEEAKKGPKITSKIYFDVEIGGEKAGRIVMGLYGKTVPKTAENFRALATGEKGEGKS
A9NK21________________LVFLGAIAFTQAKNENPEE---ITHKVYFDVEIAGKPAGRVVIGLFGKTVPKTVENFRALCTGEKGVGKS
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
