SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157693

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene157693
CAAGCGAGCAGCGATGAGAAGATCACCAACCGCGTTTTCTTCGATGTTAACATTGGCGGCCAGGATGCCGGCCGCATTGTGATCGGTCTGTTTGGTGATAGTGCCCCCAAGACCGTGGAGAACTTCCGTGCGCTGTGCACTGGTGAGAAGGGTCTTGGCAAGCGCGGCAAACCTTTGCACTACAAAGGCAGCACCTTCCACCGCGTCATTCCCAACTTCATGATTCAGGGTGGTGACTTCACTGATGGCAATGGTCGTGGTGGTGAGAGCATCTACGGTGAGAAGTTCGCGGATGAGAACTTCAAGCTGAAGCACGTCGCCCCCGGATACCTGTCTATGGCGAACGCCGGTCCCAACACCAACGGTTCTCAGTTCTTCATCACCACCGTCAAGACTCCTTGGCTTGATGGCCGCCACGTCGTGTTTGGCAAGGTCGTGGAGGGTATGGATGTTGTG

Ace file of the UniGene sp_v3.0_unigene157693

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassiosira pseudonana RepID=B8C7H9_THAPS	-	-	78%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	43H1; 46C02.10; 56B23-g9; AT3G63400; AT4g34960; At2g15790; At2g16600; At2g21130; At2g29960; At3g55920; At3g56070; At3g62030; At3g63400; At4g34870; At4g34960; At4g34960/M4E13_20; At4g38740; At5g13120; At5g58710; B1331F11.9; BcABH; CHLREDRAFT_136386; CHLRED

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	membrane fraction	GO:0005624	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to light intensity	GO:0009642	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	response to mannitol stimulus	GO:0010555	Biological Process	-
Sma3	floral meristem determinacy	GO:0010582	Biological Process	-
Sma3	cysteine biosynthetic process	GO:0019344	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29960.1	CYP5, ATCYP5, CYP19-4 cyclophilin 5 chr2:12769183-12770528 REVERSE LENGTH=201	77%
RefSeq	Arabidopsis thaliana	NP_180557.1	Peptidyl-prolyl cis-trans isomerase CYP19-4 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002313378.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK21

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 152 - 204

Fln protein: QASSDEKITNRVFFDVNIGGQDAGRIVIGLFGDSAPKTVENFRALCTGEKGLGKRGKPLHYKGSTFHRVIPNFMIQGGDFTDGNGRGGESIYGEKFADENFKLKHVAPGYLSMANAGPNTNGSQFFITTVKTPWLDGRHVVFGKVVEGMDVV

Protein Length: 153

Fln nts: CAAGCGAGCAGCGATGAGAAGATCACCAACCGCGTTTTCTTCGATGTTAACATTGGCGGCCAGGATGCCGGCCGCATTGTGATCGGTCTGTTTGGTGATAGTGCCCCCAAGACCGTGGAGAACTTCCGTGCGCTGTGCACTGGTGAGAAGGGTCTTGGCAAGCGCGGCAAACCTTTGCACTACAAAGGCAGCACCTTCCACCGCGTCATTCCCAACTTCATGATTCAGGGTGGTGACTTCACTGATGGCAATGGTCGTGGTGGTGAGAGCATCTACGGTGAGAAGTTCGCGGATGAGAACTTCAAGCTGAAGCACGTCGCCCCCGGATACCTGTCTATGGCGAACGCCGGTCCCAACACCAACGGTTCTCAGTTCTTCATCACCACCGTCAAGACTCCTTGGCTTGATGGCCGCCACGTCGTGTTTGGCAAGGTCGTGGAGGGTATGGATGTTGTG

Fln Alignment:

HLKU4M004ILP0V___EKITNRVFFDVNIGGQDAGRIVIGLFGDSAPKTVENFRALCTGEKGLGKRGKPLHYKGSTFHRVIPNFMIQXXXXXXXXXXXXESIYGEKFADENFKLKHVAPGYLSMANAGPNTNGSQFFITTVKTPWLDGRHVVFGKVVEGMDVV
A9NK21________________EEITHKVYFDVEIAGKPAGRVVIGLFGKTVPKTVENFRALCTGEKGVGKSGKPLHYKGSFFHRIIPSFMIQGGDFTLGDGRGGESIYGIKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTDWLDGRHVVFGKVISGMDVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain