SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157587

Length: 291 nt

UniGene Fasta

>sp_v3.0_unigene157587
AGTTTGTATACTCGATAAATTAAGCTTCGATGCCGAACAATACGGTGCATAGCACGTTCTGCAAATTGCAGGCGCAGCCGCTGTGTGGCGCTGCGCTGCTGCCGCTCAAGACCAAGACCAAAGGCCCTGCCCCGGCCGCCAACCAGAAGGATGATGACATCGTGGATGAGGCCATCAAATTTTGGCGCGTCAATGTTTTGTTCAAAAACTTCGAACCCGAAGGACCTGCGGACCTGATTTTGGCGTATCTGACGGTTATGATCGGTGAAGTGATTCGCGAGTGTGTGAAAT

Ace file of the UniGene sp_v3.0_unigene157587

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin-related protein 2/3 complex subunit 3, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAN8_PHYIT	-	-	1.0e-14	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	cDNA, clone: J090029G01, full insert sequence	-	-	4.386e-06	-

Source	Gene names
Sma3	OJ1145_E05.12; OsI_06482; OsJ_06009;

Source	GOs	Term	Type	e value	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	0.0	-
Sma3	regulation of actin filament polymerization	GO:0030833	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ARP2/3 complex, p21-Arc subunit	IPR007204	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60430.1	ARPC3 actin-related protein C3 chr1:22264797-22265682 REVERSE LENGTH=174	2.0e-17	48%
RefSeq	Arabidopsis thaliana	NP_564757.1	actin-related protein C3 [Arabidopsis thaliana]	2.0e-17	48%
RefSeq	Populus trichocarpa	XP_002324615.1	predicted protein [Populus trichocarpa]	3.0e-18	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB19

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 87 - 174

Fln protein: MPNNTVHSTFCKLQAQPLCGAALLPLKTKTKGPAPAANQKDDDIVDEAIKFWRVNVLFKNFEPEGPADLILAYLTVMIGEVIRECVK

Protein Length: 88

Fln nts: AGTTTGTATACTCGATAAATTAAGCTTCG_-_ATGCCGAACAATACGGTGCATAGCACGTTCTGCAAATTGCAGGCGCAGCCGCTGTGTGGCGCTGCGCTGCTGCCGCTCAAGACCAAGACCAAAGGCCCTGCCCCGGCCGCCAACCAGAAGGATGATGACATCGTGGATGAGGCCATCAAATTTTGGCGCGTCAATGTTTTGTTCAAAAACTTCGAACCCGAAGGACCTGCGGACCTGATTTTGGCGTATCTGACGGTTATGATCGGTGAAGTGATTCGCGAGTGTGTGAAAT

Fln Alignment:

HLKU4M004I1LT6___HSTFCKLQA-QPLCGAALLPLKTKTKGPAPAANQKDDDIVDEAIKFWRVNVLFKNFEPEGPADLILAYLTVMIGEVIR
D5AB19________________HSSFVNEEGITQACGCPLLPLKSHIRGPAPISDPGKTDIIDEAITFFRANVFFRKFEVKSPADKLLIYSTLFINMALK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain