SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157570

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene157570
GTTATTTACTCTATACTTTAAGATGTCCGACTTTGGAGAGTTGGTGTTGGTGTTGGGCGACCTTCACATCCCGCATCGCAAAGAGGACCTCCCCGAACAGTTTAAGGCGCTGCTCGTCCCGAATAAGATGCAGCACGTTCTGTGCACGGGTAACGTGTGCTCGAAGTCGATGGACGACTACCTCCGCACTCTCGCAAACAGCGTGCACATCGTGCGCGGCGATATGGACAGCCCGAAAAGCGATTTGCCGGAACACAAAATCGTGAAAATCGGCGAATTCACGATCGGCGTGTGTCACGGACATCAGGTCGTTCCGTGGGGCGATCCGGAAGCGCTCGCGAATTTGCAGCGCAAGCTCGACGTCGACATCCTCATCACCGGTCACACTCATAAAAACGAAGTGTACGAATACGAAAAGAAATACATCATTAATCCCGGATCGGTTACCGGCGCGTACAGCGCGACGACCACGAACGTCATCCCGT

Ace file of the UniGene sp_v3.0_unigene157570

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0622 Predicted phosphoesterase	-	-	5.0e-28	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Vacuolar protein sorting, putative	-	-	7.082e-09	-

Source	Gene names
Sma3	AT3G47810; At3g47810; CHLREDRAFT_195544; GSVIVT00000118001; GSVIVT00002002001; GSVIVT00037022001; MICPUN_97830; Os02g0265400; OsI_06659; OsJ_06169; P0006C08.21; PHATRDRAFT_17936; PHYPADRAFT_202685; PHYPADRAFT_234805; POPTRDRAFT_727869; POPTRDRAFT_828700;

Source	GOs	Term	Type	Identity
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	retromer complex	GO:0030904	Cellular Component	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphodiesterase MJ0936	IPR000979	-	0.0	-
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47810.2	-	56%
RefSeq	Arabidopsis thaliana	NP_974399.2	vacuolar protein sorting 29 protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002331858.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ66

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 154 - 187

Fln protein: MSDFGELVLVLGDLHIPHRKEDLPEQFKALLVPNKMQHVLCTGNVCSKSMDDYLRTLANSVHIVRGDMDSPKSDLPEHKIVKIGEFTIGVCHGHQVVPWGDPEALANLQRKLDVDILITGHTHKNEVYEYEKKYIINPGSVTGAYSATTTNVIP

Protein Length: 155

Fln nts: GTTATTTACTCTATACTTTAAG_-_ATGTCCGACTTTGGAGAGTTGGTGTTGGTGTTGGGCGACCTTCACATCCCGCATCGCAAAGAGGACCTCCCCGAACAGTTTAAGGCGCTGCTCGTCCCGAATAAGATGCAGCACGTTCTGTGCACGGGTAACGTGTGCTCGAAGTCGATGGACGACTACCTCCGCACTCTCGCAAACAGCGTGCACATCGTGCGCGGCGATATGGACAGCCCGAAAAGCGATTTGCCGGAACACAAAATCGTGAAAATCGGCGAATTCACGATCGGCGTGTGTCACGGACATCAGGTCGTTCCGTGGGGCGATCCGGAAGCGCTCGCGAATTTGCAGCGCAAGCTCGACGTCGACATCCTCATCACCGGTCACACTCATAAAAACGAAGTGTACGAATACGAAAAGAAATACATCATTAATCCCGGATCGGTTACCGGCGCGTACAGCGCGACGACCACGAACGTCATCCCGT

Fln Alignment:

HLKU4M004IFSCY___LVLVLGDLHIPHRKEDLPEQFKALLVPNKMQHVLCTGNVCSKSMDDYLRTLANSVHIVRGDMDSPKSDLPEHKIVKIGEFTIGVCHGHQVVPWGDPEALANLQRKLDVDILITGHTHKNEVYEYEKKYIINPGSVTGAYSATTTNVIP
A9NZ66________________LVLALGDLHIPHRAPDLPTKFKSMLVPGKIQHIISPGNLCIKEVYDYLKSLCPDLHVTRGEYDEDPR-YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILITGHTHQFKAYKHEGGVVINPGSATGAYSSITYDVNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain