SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157545

Length: 385 nt

UniGene Fasta

>sp_v3.0_unigene157545
CGTGTATCGCTTCGTTCTACCACAAGATCGGCCTCACCAACCTCCGCTTCAAGCCCGCCTTCAACCCCTACACCGAGCCGTCGATGGAGGTGTTCGCGCAGCACCCCGAGCGCGGCTGGGTCGAGGTCGGCAACAGCGGCGTCTTCCGCCCGGAGATGCTCAAGCCCATGGGGCTGCCCGACGACGTCCAGGTCATCGCCTGGGGCCTCGGCCTCGAGCGGCCAACCATGATCCTGTACAAGATCTCCAATATCCGCGACCTCTTCGGCCACCGCGTCCCGCTGCAGTCGATCCGCAACAACCCGATCTGCCGGTTGGACAAGCCGCTCTACAACCCCGACAAGGAGCACAAGCACGGCGAGAAGGAGGTGGCGCCATGAGCGTT

Ace file of the UniGene sp_v3.0_unigene157545

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phenylalanyl-tRNA synthetase alpha chain-like protein [Callithrix jacchus]	-	-	2.0e-38	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:6.1.1.2-	-	4.851e-07	-

Source	Gene names
Sma3	At4g39280; CHLREDRAFT_137578; CUPC17; GSVIVT00036385001; LOC_Os10g26130; MICPUCDRAFT_70771; MICPUN_64197; OSJNBa0050N08.23; OSTLU_33470; Os10g0400800; OsI_33484; OsJ_31442; Ot09g01810; PHATRDRAFT_25331; PHYPADRAFT_226393; POPTRDRAFT_1076579; POPTRDRAFT_82

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phenylalanyl-tRNA synthetase	IPR002319	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	IPR004529	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3		IPR018157	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39280.1	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative chr4:18281641-18284831 REVERSE LENGTH=485	0.0	68%
RefSeq	Arabidopsis thaliana	NP_195639.2	phenylalanyl-tRNA synthetase alpha chain [Arabidopsis thaliana]	0.0	68%
RefSeq	Populus trichocarpa	XP_002305428.1	predicted protein [Populus trichocarpa]	8.00141e-43	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ4

Fln msg: your sequence is shorter than subject: 126 - 257

Fln protein: CIASFYHKIGLTNLRFKPAFNPYTEPSMEVFAQHPERGWVEVGNSGVFRPEMLKPMGLPDDVQVIAWGLGLERPTMILYKISNIRDLFGHRVPLQSIRNNPICRLDKPLYNPDKEHKHGEKEVAP*

Protein Length: 127

Fln nts: CGTGTATCGCTTCGTTCTACCACAAGATCGGCCTCACCAACCTCCGCTTCAAGCCCGCCTTCAACCCCTACACCGAGCCGTCGATGGAGGTGTTCGCGCAGCACCCCGAGCGCGGCTGGGTCGAGGTCGGCAACAGCGGCGTCTTCCGCCCGGAGATGCTCAAGCCCATGGGGCTGCCCGACGACGTCCAGGTCATCGCCTGGGGCCTCGGCCTCGAGCGGCCAACCATGATCCTGTACAAGATCTCCAATATCCGCGACCTCTTCGGCCACCGCGTCCCGCTGCAGTCGATCCGCAACAACCCGATCTGCCGGTTGGACAAGCCGCTCTACAACCCCGACAAGGAGCACAAGCACGGCGAGAAGGAGGTGGCGCCATGA___GCGTT

Fln Alignment:

HLKU4M004H41P9___FYHKIGLTNLRFKPAFNPYTEPSMEVFAQHPE-RGWVEVGNSGVFRPEMLKPMGLPDDVQVIAWGLGLERPTMILYKISNIRDLFGHRVPLQSIRNNPICRL
D5ABZ4________________FFSRLGMIKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGIFRPEMLLPMGLPEDVSVIAWGLSLERPTMILYGIDNIRDLFGHKVDLNLIKKNPICRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain