SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157504

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene157504
CATCACGTACGCCAGCGTGCATGACAGCTTCTGGACTCATGGCTGCACTATGGACACCCTCAACAAGCTGCTGCGCGAGGAGTTCGTCAAGCTGCACAGCCAGCCACTGCTGACCAACCTCCTGTCCAACTTCAAGAAACTATATCCTCAAGTTCGGTTTCCTGATCCTCCTCCCTCTGGAGACTTGGATCTTAATCTGGTGCTCAACAGCCCTTACTTCTTCCACTGAGTCATCTTGTGGCTGATGCAGGC

Ace file of the UniGene sp_v3.0_unigene157504

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=Q0QFR1_ACACA	-	-	2.0e-22	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	DNA-directed RNA polymerase	-	-	1.16e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	1.457e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.457e-10	%
Sma3	Pyrimidine metabolism	00240	1.457e-10	%
Sma3	Metabolic pathways	01100	1.457e-10	%

Source	Gene names
Sma3	At5g15700; F14F8_80; OSTLU_34669; Os09g0246200; OsI_30516; OsJ_28503; Ot09g03980; RPOT2; RPOT3-TOM; rpoT; rpoT1;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase, phage-type	IPR002092	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68990.2	MGP3 male gametophyte defective 3 chr1:25935499-25940755 REVERSE LENGTH=983	2.0e-23	52%
RefSeq	Arabidopsis thaliana	NP_197074.1	DNA-directed RNA polymerase 2 [Arabidopsis thaliana]	3.0e-25	57%
RefSeq	Populus trichocarpa	XP_002329240.1	predicted protein, partial [Populus trichocarpa]	4.0e-23	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB05

Fln msg: your sequence is shorter than subject: 76 - 255

Fln protein: ITYASVHDSFWTHGCTMDTLNKLLREEFVKLHSQPLLTNLLSNFKKLYPQVRFPDPPPSGDLDLNLVLNSPYFFH*

Protein Length: 77

Fln nts: CATCACGTACGCCAGCGTGCATGACAGCTTCTGGACTCATGGCTGCACTATGGACACCCTCAACAAGCTGCTGCGCGAGGAGTTCGTCAAGCTGCACAGCCAGCCACTGCTGACCAACCTCCTGTCCAACTTCAAGAAACTATATCCTCAAGTTCGGTTTCCTGATCCTCCTCCCTCTGGAGACTTGGATCTTAATCTGGTGCTCAACAGCCCTTACTTCTTCCACTGA___GTCATCTTGTGGCTGATGCAGGC

Fln Alignment:

HLKU4M004H2ZXG___ITYASVHDSFWTHGCTMDTLNKLLREEFVKLHSQPLLTNLLSNFKKLYPQVRFPDPPPSGDLDLNLVLNSPYFFH
D5AB05________________LSFAGVHDSYWTHAANVEKMNHILREKFVELYSAPILENLLESFETSFPELTFPPLPDRGDFELNEVLNSPYFFN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain