SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157372

Length: 379 nt

UniGene Fasta

>sp_v3.0_unigene157372
TTACAGGAGCTGGTGGAGGGCTTGGGAGGCTGTATGCTTTGGAATTGGCTAAACGAGGTTGCAAAGTTCTTGTCAATGATGTAGGATGTGCTTTGAATGGAGAAGCTTCATCAAGAATTGATCCTGCTGGTGCTGTGGTTGACGAAATTACAAAGTTGGGAGGACATGCAGTAGCCAACCGAAATAGTGTTGTTGACGGTGCTGCCATTGTAGAGCATGCGCTGAAAGAGTTCGGTAGTTGTGATATTCTAATTAATAATGCCGGCATTCTTAGAGACAAGACATTTGCTAAGATGACCAAGACAGACTGGGATGAAGTTCTTGCTGTTCACTTGGGAGGTACCTTTGCATTGTGTCATGCTGCTTGGCCAGTGATGCA

Ace file of the UniGene sp_v3.0_unigene157372

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	short chain dehydrogenase/reductase family oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A] ref\|ZP_06460832.1\| short chain dehydrogenase/reductase family oxidoreductase [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref\|ZP_06479657.1\| short	-	-	3.0e-26	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	RCOM_0375500;

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR50

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 125 - 328

Fln protein: TGAGGGLGRLYALELAKRGCKVLVNDVGCALNGEASSRIDPAGAVVDEITKLGGHAVANRNSVVDGAAIVEHALKEFGSCDILINNAGILRDKTFAKMTKTDWDEVLAVHLGGTFALCHAAWPVM

Protein Length: 126

Fln nts: TTACAGGAGCTGGTGGAGGGCTTGGGAGGCTGTATGCTTTGGAATTGGCTAAACGAGGTTGCAAAGTTCTTGTCAATGATGTAGGATGTGCTTTGAATGGAGAAGCTTCATCAAGAATTGATCCTGCTGGTGCTGTGGTTGACGAAATTACAAAGTTGGGAGGACATGCAGTAGCCAACCGAAATAGTGTTGTTGACGGTGCTGCCATTGTAGAGCATGCGCTGAAAGAGTTCGGTAGTTGTGATATTCTAATTAATAATGCCGGCATTCTTAGAGACAAGACATTTGCTAAGATGACCAAGACAGACTGGGATGAAGTTCTTGCTGTTCACTTGGGAGGTACCTTTGCATTGTGTCATGCTGCTTGGCCAGTGATGCA

Fln Alignment:

HLKU4M004JE4N5___KRGCKVLVNDVGCALNGEASSRIDPAGAVVDEITKLGGHAV---ANRNSVVDGAAIVEHALKEFGSCDILINNAGILRDKTFAKMTKTDWDEVLAVHLGGTFALCHAAWPVM
C0PR50________________RAGCKVLVNYARSIKEAEDVSR---------QIEAAGGSAIIYGGDMSKEADVEGMFKTAIDSWGTIDILVNNAGITRDTLMMRMTRSQWQDVIDLNLTGVFLCTQAAAKVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain