SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157353

Length: 319 nt

UniGene Fasta

>sp_v3.0_unigene157353
AGAAATCTGAACGAAATCTGACTGAAATACATGCGTTTAATTATCCAGCGTGTCAGTTCTTCCTCTGTTGTAGTTGGTGGTAAAGAAATTAGCAGAATTGGTCGTGGGCTCCTTGTGTTTGTTGGGATTTGCAAAGGAGACGTTGAGGCCGATGCCCAATTTTGTCGTAGAAAAATTCTCAATGGGAGATTGTGGCCAAATGATCAAAACAAAGCTTGGATGAAAAGTTGCAAAGATCTTGGTTATGAGATCCTTGTTGTGAGCCAGTTTACTTTATATGGAGACTTCCAAGGCAACAAACTAGATTTACACAAAGCTA

Ace file of the UniGene sp_v3.0_unigene157353

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MV57_PHYIT	-	-	5.0e-21	51%
FL-Next	sp=D-tyrosyl-tRNA(Tyr) deacylase; Phytophthora infestans (strain T30-4) (Potato late blight fungus).	-	-	0.0	56%
Sma3	D-tyrosyl-tRNA(Tyr) deacylase	-	-	7.269e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.1.-.-	-	1.785e-17	-

Source	Gene names
Sma3	At4g18460; At4g18460/F28J12.120; B1066G12.16; GSVIVT00003012001; Os01g0242500; OsI_01121; OsJ_01069; PHYPADRAFT_113718;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	D-amino acid catabolic process	GO:0019478	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	D-tyrosyl-tRNA(Tyr) deacylase	IPR003732	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18460.1	D-Tyr-tRNA(Tyr) deacylase family protein chr4:10195763-10196679 REVERSE LENGTH=153	8.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_193582.2	D-tyrosyl-tRNA(Tyr)deacylase [Arabidopsis thaliana]	1.0e-20	52%
RefSeq	Populus trichocarpa	XP_002331968.1	predicted protein [Populus trichocarpa]	1.0e-19	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D0MV57

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 96 - 155

Fln protein: MRLIIQRVSSSSVVVGGKEISRIGRGLLVFVGICKGDVEADAQFCRRKILNGRLWPNDQNKAWMKSCKDLGYEILVVSQFTLYGDFQGNKLDLHKA

Protein Length: 97

Fln nts: AGAAATCTGAACGAAATCTGACTGAAATAC_-_ATGCGTTTAATTATCCAGCGTGTCAGTTCTTCCTCTGTTGTAGTTGGTGGTAAAGAAATTAGCAGAATTGGTCGTGGGCTCCTTGTGTTTGTTGGGATTTGCAAAGGAGACGTTGAGGCCGATGCCCAATTTTGTCGTAGAAAAATTCTCAATGGGAGATTGTGGCCAAATGATCAAAACAAAGCTTGGATGAAAAGTTGCAAAGATCTTGGTTATGAGATCCTTGTTGTGAGCCAGTTTACTTTATATGGAGACTTCCAAGGCAACAAACTAGATTTACACAAAGCTA

Fln Alignment:

HLKU4M004I12X4___MRLIIQRXXXXXXXXGGKEISRIGRGLLVFVGICKGDVEADAQFCRRKILNGRLWPNDQNKAWMKSCKDLGYEILVVSQFTLYGDFQGNKLDLH
D0MV57________________MKVVMQRVTSASVRVEGNVVGQIGNGLLCFVGIGHDDTEDDAEWCCRRLLNARLWPDEAERAWRKSLKDNDYEVLVVSQFTLHGQFAGNKPDFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain