SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157271

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene157271
GTTTTTAAACTTCTCTAAGTTTATTGGTGCAGGTCTTGCGACAATCTCTATTGCTGGGGCTGGGGTCGGTATTGGTTCTATTTTTAATGGCTTTTTATTAGCATTATCAAGGAACCCATCAGATGAAAAACGATTATTTACTTATACAATGCTTGGTTTTGCTTTAACCGAAGCAATTGCTTTA

Ace file of the UniGene sp_v3.0_unigene157271

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase subunit 9, mitochondrial n=1 Tax=Didymium iridis RepID=D2K6J9_9MYCE	-	-	1.0e-07	50%
FL-Next	sp=ATP synthase subunit 9, mitochondrial; Chondrus crispus (Carragheen moss) (Irish moss). Mitochondrion.	-	-	0.0	56%
Sma3	ATP synthase subunit 9, mitochondrial	-	-	4.248e-34	-

Source	Gene names
Sma3	ATP9; HAM_052; LOC_Os12g34110; MicpuC_mit5; MicpuN_mit60; OtMtg00030; POPTRDRAFT_681382; POPTRDRAFT_789352; RCOM_2086480; RCOM_2138310; atp9;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, coupling factor F(o)	GO:0045263	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	0.0	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: P48880

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning,

Fln protein: FLNFSKFIGAGLATISIAGAGVGIGSIFNGFLLALSRNPSDEKRLFTYTMLGFALTEAIAL

Protein Length: 62

Fln nts: GTTTTTAAACTTCTCTAAGTTTATTGGTGCAGGTCTTGCGACAATCTCTATTGCTGGGGCTGGGGTCGGTATTGGTTCTATTTTTAATGGCTTTTTATTAGCATTATCAAGGAACCCATCAGATGAAAAACGATTATTTACTTATACAATGCTTGGTTTTGCTTTAACCGAAGCAATTGCTTTA

Fln Alignment:

HLKU4M004H93NF___LNFSKFIGAGLATXXXXXXXXXXXXXFNGFLLALSRNPSDEKRLFTYTMLGFALTEAIAL
P48880________________LQSAKMIGAGLATIGLTGVGAGVGIVFGSLVMAYARNPSLKQQLFGYTILGFALTEAVAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain