UniGene Name: sp_v3.0_unigene157243
Length: 171 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene157243
G |
Ace file of the UniGene sp_v3.0_unigene157243 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Succinate dehydrogenase flavoprotein subunit, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6RB91_CRYGW | - | - | 2.0e-14 | 72% |
FL-Next | sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 62% |
Sma3 | FP | - | - | 1.042e-12 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Succinate dehydrogenase (ubiquinone). | EC:1.3.5.1 | - | 3.51e-16 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Citrate cycle (TCA cycle) | 00020 | 3.51e-16 | % | |
Sma3 | Oxidative phosphorylation | 00190 | 3.51e-16 | % | |
Sma3 | Biosynthesis of phenylpropanoids | 01061 | 3.51e-16 | % | |
Sma3 | Biosynthesis of terpenoids and steroids | 01062 | 3.51e-16 | % | |
Sma3 | Biosynthesis of alkaloids derived from shikimate pathway | 01063 | 3.51e-16 | % | |
Sma3 | Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid | 01064 | 3.51e-16 | % | |
Sma3 | Biosynthesis of alkaloids derived from histidine and purine | 01065 | 3.51e-16 | % | |
Sma3 | Biosynthesis of alkaloids derived from terpenoid and polyketide | 01066 | 3.51e-16 | % | |
Sma3 | Biosynthesis of plant hormones | 01070 | 3.51e-16 | % | |
Sma3 | Metabolic pathways | 01100 | 3.51e-16 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 3.51e-16 | % |
Source | Gene names |
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Sma3 | At2g18450; At5g66760; LOC_Os07g04240; MICPUCDRAFT_30055; MICPUN_106467; MSN2.16; OSTLU_29304; Os07g0134800; OsI_24801; OsJ_23002; Ot14g00120; P0507H12.27; PHATR_41812; PHYPADRAFT_181904; PHYPADRAFT_196863; POPTRDRAFT_219180; POPTRDRAFT_593943; RCOM_056646 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | mitochondrial inner membrane | GO:0005743 | Cellular Component | 0.0 | - |
Sma3 | succinate dehydrogenase activity | GO:0000104 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | succinate dehydrogenase (ubiquinone) activity | GO:0008177 | Molecular Function | 0.0 | - |
Sma3 | electron carrier activity | GO:0009055 | Molecular Function | 0.0 | - |
Sma3 | oxidoreductase activity, acting on the CH-CH group of donors | GO:0016627 | Molecular Function | 0.0 | - |
Sma3 | flavin adenine dinucleotide binding | GO:0050660 | Molecular Function | 0.0 | - |
Sma3 | tricarboxylic acid cycle | GO:0006099 | Biological Process | 0.0 | - |
Sma3 | mitochondrial electron transport, succinate to ubiquinone | GO:0006121 | Biological Process | 0.0 | - |
Sma3 | transport | GO:0006810 | Biological Process | 0.0 | - |
Sma3 | electron transport chain | GO:0022900 | Biological Process | 0.0 | - |
Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Fumarate reductase/succinate dehydrogenase, FAD-binding site | IPR003952 | - | 0.0 | - |
Sma3 | Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal | IPR003953 | - | 0.0 | - |
Sma3 | IPR004112 | - | 0.0 | - | |
Sma3 | Succinate dehydrogenase, flavoprotein subunit | IPR011281 | - | 0.0 | - |
Sma3 | Succinate dehydrogenase/fumarate reductase, flavoprotein subunit | IPR014006 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G66760.1 | SDH1-1 succinate dehydrogenase 1-1 chr5:26653776-26657224 FORWARD LENGTH=634 | 4.0e-16 | 62% |
RefSeq | Arabidopsis thaliana | NP_201477.1 | succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 [Arabidopsis thaliana] | 5.0e-16 | 62% |
RefSeq | Populus trichocarpa | XP_002310225.1 | predicted protein, partial [Populus trichocarpa] | 5.0e-16 | 62% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: O82663
Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 56 - 634
Fln protein:
L
Protein Length:
57
Fln nts:
G
Fln Alignment:
HLKU4M004I8NW0___LNAQMTIVGAEARKESRGAHAREDFPDRNDEEWMKHTISYIDENSGKVTLQYRDVH
O82663________________INASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDE--KVRLDYRPVH
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain