SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157166

Length: 250 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene157166
TGTTGCCATCGGCACCGTCGGCATGTCCCAGGACCAGATCGTCTCCAACGCTCAGACCTCGGTCAACTTCCTGGTCTCGCTGCTCAAGAAGAACTGGCAGAACGTGCGCTCCGTCACGATCAAGTCCACCATGGGACCCCCCCAGCGCCTGTACTAAAGGCTGAAAGCCATGTCCGCGAGTACCAAGGGCACACATCGGTGTGTCTATTTGGGAGCGGGGTAATCTTCAAATGCAAGCCTGCGCCACCAT

Ace file of the UniGene sp_v3.0_unigene157166 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein n=3 Tax=Chromadorea RepID=A8NG31_BRUMA	-	-	2.0e-14	76%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Ribosomal protein L1	-	-	1.108e-33	-

Source	Gene names
Sma3	At1g08360; At2g27530; At5g22440; F10A12.22; F15K20.37; MICPUCDRAFT_49658; MICPUN_95416; MWD9.24; OJ1150_A11.31; OSTLU_45590; OsI_30253; OsI_30261; OsJ_28264; OsJ_28271; P0562A06.10-1; P0562A06.10-2; PHYPADRAFT_109539; PHYPADRAFT_110650; PHYPADRAFT_180214;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08360.1	Ribosomal protein L1p/L10e family chr1:2636231-2637694 FORWARD LENGTH=216	8.0e-18	66%
RefSeq	Arabidopsis thaliana	NP_563813.2	60S ribosomal protein L10a-1 [Arabidopsis thaliana]	1.0e-17	66%
RefSeq	Populus trichocarpa	XP_002328252.1	predicted protein [Populus trichocarpa]	5.0e-17	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV9

Fln msg: your sequence is shorter than subject: 52 - 216

Fln protein: VAIGTVGMSQDQIVSNAQTSVNFLVSLLKKNWQNVRSVTIKSTMGPPQRLY*

Protein Length: 53

Fln nts: TGTTGCCATCGGCACCGTCGGCATGTCCCAGGACCAGATCGTCTCCAACGCTCAGACCTCGGTCAACTTCCTGGTCTCGCTGCTCAAGAAGAACTGGCAGAACGTGCGCTCCGTCACGATCAAGTCCACCATGGGACCCCCCCAGCGCCTGTACTAA___AGGCTGAAAGCCATGTCCGCGAGTACCAAGGGCACACATCGGTGTGTCTATTTGGGAGCGGGGTAATCTTCAAATGCAAGCCTGCGCCACCAT

Fln Alignment:

HLKU4M004JH7LH___VAIGTVGMSQDQIVSNAQTSVNFLVSLLKKNWQNVRSVTIKSTMGPPQRLY
A9NNV9________________VAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain