SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157163

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene157163
TCGTGAACTCTCTTTGAAATGGCATCCTGATAAAAATCCGGATAAAAAGGAAGAAGCGGAGAAGAAATTTGTAGAGATAGCGCAGGCCTACGAAGTCCTTTCAGATGAAGAAAAGAGAAAAATCTATGACCAGTATGGCGAAGAAGGTCTTAGCCAGAACGCTCAAGCTGGTAATCGCGGCGGTTTCC

Ace file of the UniGene sp_v3.0_unigene157163

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ-like subfamily B member 6 n=2 Tax=Percomorpha RepID=Q3HS39_PAROL	-	-	2.0e-17	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Protein SIS1, putative	-	-	5.202e-11	-

Source	Gene names
Sma3	AT4g28480; At1g10350; At2g20560; At3g08910; At3g62600; At4g28480; At5g01390; At5g01390/T10O8_100; At5g25530; CHLREDRAFT_134606; CHLREDRAFT_195902; CHLREDRAFT_96566; DNJ3; DNJ35; ERJ1; F20O9.160; F23H11.4; F26K9_30; GSVIVT00000072001; GSVIVT00003050001; GS

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015609	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01390.1	DNAJ heat shock family protein chr5:160500-162199 REVERSE LENGTH=335	2.0e-22	61%
RefSeq	Arabidopsis thaliana	NP_001154690.1	putative DNAJ heat shock protein [Arabidopsis thaliana]	1.0e-22	61%
RefSeq	Populus trichocarpa	XP_002324266.1	predicted protein [Populus trichocarpa]	2.0e-22	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM7

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 62 - 336

Fln protein: RELSLKWHPDKNPDKKEEAEKKFVEIAQAYEVLSDEEKRKIYDQYGEEGLSQNAQAGNRGGF

Protein Length: 63

Fln nts: TCGTGAACTCTCTTTGAAATGGCATCCTGATAAAAATCCGGATAAAAAGGAAGAAGCGGAGAAGAAATTTGTAGAGATAGCGCAGGCCTACGAAGTCCTTTCAGATGAAGAAAAGAGAAAAATCTATGACCAGTATGGCGAAGAAGGTCTTAGCCAGAACGCTCAAGCTGGTAATCGCGGCGGTTTCC

Fln Alignment:

HLKU4M004JURPQ___RELSLKWHPDKNPDKKEEAEKKFVEIAQAYEVLSDEEKRKIYDQYGEEGLSQNAQAGNRGG
B8LLM7________________RKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDNQKRQIYDQYGEEGLKGQVPPPAAGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain