SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157099

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene157099
ATTCACGACTCGTGCTAGAAGCTTTATACCTGCTTCTCTACCATATCTTCGAACTACACCGCAACAGCAACACAGGACATTGTTCACAGCAAGAACAGCAAACATGGCATCAGCAACATCATTCTACGATTTCAAGCCACTCGACAAGAAAGGCAACGCCACACCCCTCGAATCCTACAAAGGAAAAGTAGTCTTGATCGTCAACACGGCTAGTAAATGCGGATTCACGCCACAATATGAAGGTCTGGAGAAATTGTATAAGAAGTTGAAGGAGACGCATGGAGACGATTTCCAAATCCTCGGCTTCCCCTGCAACCAATTCGGCTCCCAAGAACCCGGCACAGACGACGACATCCAATCCTTCTGTCTCGTAAACTACGGGGTCTCCTTCCCCATCATGGGCAAAACCGACGTAAACGGTGATA

Ace file of the UniGene sp_v3.0_unigene157099

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione peroxidase n=1 Tax=Glomerella graminicola M1.001 RepID=E3QAS9_COLGM	-	-	8.00001e-41	74%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Glutathione peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-hydroperoxide glutathione peroxidase.	EC:1.11.1.12	-	1.453e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.453e-16	%

Source	Gene names
Sma3	At4g11600; BarPHGPX; CHLREDRAFT_137012; CHLREDRAFT_143122; CSA; GHPOD; GP; GPX1; GPX3; GPX5; GPX6; GPXHA-1; GPXle-1; GSVIVT00032791001; Gpx; Os02g0664000; Os04g0556300; OsI_08376; OsI_16938; OsJ_07838; OsJ_15735; P0461B08.1; PHGPX; PHYPADRAFT_134949; POPT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	phospholipid-hydroperoxide glutathione peroxidase activity	GO:0047066	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11600.1	ATGPX6, PHGPX, LSC803, GPX6 glutathione peroxidase 6 chr4:7010021-7011330 REVERSE LENGTH=232	6.0e-26	49%
RefSeq	Arabidopsis thaliana	NP_192897.2	glutathione peroxidase [Arabidopsis thaliana]	8.0e-26	49%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN61

Fln msg: Distance to subject end: 58 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 107 - 171

Fln protein: MASATSFYDFKPLDKKGNATPLESYKGKVVLIVNTASKCGFTPQYEGLEKLYKKLKETHGDDFQILGFPCNQFGSQEPGTDDDIQSFCLVNYGVSFPIMGKTDVNGD

Protein Length: 108

Fln nts: ATTCACGACTCGTGCTAGAAGCTTTATACCTGCTTCTCTACCATATCTTCGAACTACACCGCAACAGCAACACAGGACATTGTTCACAGCAAGAACAGCAAAC_-_ATGGCATCAGCAACATCATTCTACGATTTCAAGCCACTCGACAAGAAAGGCAACGCCACACCCCTCGAATCCTACAAAGGAAAAGTAGTCTTGATCGTCAACACGGCTAGTAAATGCGGATTCACGCCACAATATGAAGGTCTGGAGAAATTGTATAAGAAGTTGAAGGAGACGCATGGAGACGATTTCCAAATCCTCGGCTTCCCCTGCAACCAATTCGGCTCCCAAGAACCCGGCACAGACGACGACATCCAATCCTTCTGTCTCGTAAACTACGGGGTCTCCTTCCCCATCATGGGCAAAACCGACGTAAACGGTGATA

Fln Alignment:

HLKU4M004H877C___ARTANMASATSFYDFKPLDKKGNATPLESYKGKVVLIVNTASKCGFTPQXXXXXXXXXXXXXTHGDDFQILGFPCNQFGSQEPGTDDDIQSFCLVNYGVSFPIMGKTDVNG
A9NN61________________AQSSEKPKEQSIHEFSVKDITGQDVDLSTYKGKVLLVVNVASQCGFTKSNYSQLTELYNKYKDK--DFEILAFPCNQFGSQEPGTNEEIKDFACTRYKAEFPIFDKVDVNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain