SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157085

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene157085
AAAGTTCGTCTCTTTGGAGGAATCCATCAGCGGATTCAAGGGTATCTTGGAAGGAAAGTACGACGATATCCCAGAATCAGCTTTCTATATGGTCGGTAACATCGACGAAGTCATCGAAAAGGCCAAGAAGCTCGCCGCCACTTTGGGAAGTCAAAAGGAAGGAGAGAAGGACGACAAGAAAAAGAAGTCCAACGCTTTCATCCAAGTCACACCCGAAGTCTTTGAGGAAGTCTACAAGAAGTTGACTGACTCCGCCACAAAAGCCGAAGCCGAAGAAGTTGCCAAGAACCCAACCAAGGCCGAATCCATCAAGAAGAAGTGGGCTGACTGGCGCGTGAAGGCTGCCGAAGAGAAGAAGACCTACCTCGAACTCCTAAGGGATTAAGTTGTTGTTGTCTCTTTTGGCTTTCTTTTCACTTGACACTTTATCTTAATTTACAGTATATAAATACATACTTTGT

Ace file of the UniGene sp_v3.0_unigene157085 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase subunit beta n=1 Tax=Nitratiruptor sp. SB155-2 RepID=ATPB_NITSB	-	-	8.0e-14	78%
FL-Next	sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	ATP synthase subunit beta, chloroplastic	-	-	1.474e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	7.741e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Oxidative phosphorylation	00190	7.741e-08	%
Sma3	Photosynthesis	00195	7.741e-08	%
Sma3	Methane metabolism	00680	7.741e-08	%
Sma3	Metabolic pathways	01100	7.741e-08	%

Source	Gene names
Sma3	ATPB; Grc000130; MICPUCDRAFT_49420; MICPUN_107337; Os01g0685800; OsJ_03042; OtCpg00100; P0478H03.30-1; P0478H03.30-2; PHYPADRAFT_150081; PHYPADRAFT_218214; POPTRDRAFT_794462; atp2; atpB; nsatp2.1.1; nsatp2.2.1;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	plasma membrane ATP synthesis coupled proton transport	GO:0042777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08690.1	ATP synthase alpha/beta family protein chr5:2825739-2828352 FORWARD LENGTH=556	2.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_568204.1	ATP synthase subunit beta-2 [Arabidopsis thaliana]	2.0e-12	60%
RefSeq	Populus trichocarpa	XP_002315902.1	mitochondrial beta subunit of F1 ATP synthase [Populus trichocarpa]	2.0e-12	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUR7

Fln msg: your sequence is shorter than subject: 128 - 568

Fln protein: KFVSLEESISGFKGILEGKYDDIPESAFYMVGNIDEVIEKAKKLAATLGSQKEGEKDDKKKKSNAFIQVTPEVFEEVYKKLTDSATKAEAEEVAKNPTKAESIKKKWADWRVKAAEEKKTYLELLRD*

Protein Length: 129

Fln nts: AAAGTTCGTCTCTTTGGAGGAATCCATCAGCGGATTCAAGGGTATCTTGGAAGGAAAGTACGACGATATCCCAGAATCAGCTTTCTATATGGTCGGTAACATCGACGAAGTCATCGAAAAGGCCAAGAAGCTCGCCGCCACTTTGGGAAGTCAAAAGGAAGGAGAGAAGGACGACAAGAAAAAGAAGTCCAACGCTTTCATCCAAGTCACACCCGAAGTCTTTGAGGAAGTCTACAAGAAGTTGACTGACTCCGCCACAAAAGCCGAAGCCGAAGAAGTTGCCAAGAACCCAACCAAGGCCGAATCCATCAAGAAGAAGTGGGCTGACTGGCGCGTGAAGGCTGCCGAAGAGAAGAAGACCTACCTCGAACTCCTAAGGGATTAA___GTTGTTGTTGTCTCTTTTGGCTTTCTTTTCACTTGACACTTTATCTTAATTTACAGTATATAAATACATACTTTGT

Fln Alignment:

HLKU4M004H78OY___KFVSLEESISGFKGILEGKYDDIPESAFYMVGNIDEVIEKAKKL
A9NUR7________________KYVDLKESIASFQGVLDGKYDDLPEQSFYMVGGIDEVTAKAEKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain