SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157030

Length: 428 nt

UniGene Fasta

>sp_v3.0_unigene157030
CTTCGACGATGCTTCAAATACTTCAGCGCTGATATGCGCGTCTTGGGAAAGGATGCGAAGAAGCGCGTTGTCATCGATGTCTGGTTCGCCACCGTCGCCACCAACGCTTGCATCCAGACCGTCATTTCCCACATCCGCAACATGATCGTCGGCGTCACCAAGGGATTCGAAAGGCGTATGCGTTTCGTCTATGCCCATTTTCCCATGGACGCTTCCATCGCCGACGATGGATCCGAAATCGAAATCCGCAACTTTTTGGGAGAGAAGATCCTCAGAAAAGTCGCCATGCCCCAAGGCGTTAAGATTATTCGATCTGATGCCAAAGACGAAATCATTTTGCAAGGAAACAATGTTGAGAAGGTCTCTCAAGCTGCCGCCCAAATTCATCAAGTCTGCCTTGTCAAGAAGAAGGATATTCGTAAGTTCTT

Ace file of the UniGene sp_v3.0_unigene157030

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 60S ribosomal protein L9 [Oryza sativa Japonica Group] gb\|EEC72297.1\| hypothetical protein OsI_05474 [Oryza sativa Indica Group] gb\|EEE56134.1\| hypothetical protein OsJ_05010 [Oryza sativa Japonica Group]	-	-	5.0e-37	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	60S ribosomal protein L9	-	-	4.328e-22	-

Source	Gene names
Sma3	At1g33120; At1g33140; At4g10450; CHLREDRAFT_139831; F7L13.30; GSVIVT00034120001; GSVIVT00037149001; MICPUCDRAFT_32821; MICPUN_106868; OJ1435_F07.31; OSTLU_45591; Os02g0103700; Os09g0485900; OsI_05474; OsI_31831; OsJ_05010; OsJ_29817; Ot04g01850; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G33140.1	PGY2 Ribosomal protein L6 family chr1:12023360-12024502 FORWARD LENGTH=194	55%
RefSeq	Arabidopsis thaliana	NP_564418.1	60S ribosomal protein L9-1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300530.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ11

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 142 - 189

Fln protein: LRRCFKYFSADMRVLGKDAKKRVVIDVWFATVATNACIQTVISHIRNMIVGVTKGFERRMRFVYAHFPMDASIADDGSEIEIRNFLGEKILRKVAMPQGVKIIRSDAKDEIILQGNNVEKVSQAAAQIHQVCLVKKKDIRKF

Protein Length: 143

Fln nts: CTTCGACGATGCTTCAAATACTTCAGCGCTGATATGCGCGTCTTGGGAAAGGATGCGAAGAAGCGCGTTGTCATCGATGTCTGGTTCGCCACCGTCGCCACCAACGCTTGCATCCAGACCGTCATTTCCCACATCCGCAACATGATCGTCGGCGTCACCAAGGGATTCGAAAGGCGTATGCGTTTCGTCTATGCCCATTTTCCCATGGACGCTTCCATCGCCGACGATGGATCCGAAATCGAAATCCGCAACTTTTTGGGAGAGAAGATCCTCAGAAAAGTCGCCATGCCCCAAGGCGTTAAGATTATTCGATCTGATGCCAAAGACGAAATCATTTTGCAAGGAAACAATGTTGAGAAGGTCTCTCAAGCTGCCGCCCAAATTCATCAAGTCTGCCTTGTCAAGAAGAAGGATATTCGTAAGTTCTT

Fln Alignment:

HLKU4M004JRJTJ___LRRCFKYFSADMRVLGKDAKKRVVIDVWFATVATNACIQTVISHIRNMIVGVTKGFERRMRFVYAHFPMDASIADDGSEIEIRNFLGEKILRKVAMPQGVKIIRSD-AKDEIILQGNNVEKVSQAAAQIHQVCLVKKKDIRKF
A9NQ11________________LTRNFKHLNLDFQLM--EGGRKLKVDAWFGSRKTMAAIRTAISHVTNLITGVTKGYRYKMRFVYAHFPINASIGGDKKNIEIRNFLGEKKVRKVELLDGVTITRSEKVKDEVILEGNDIELVSRSAALINQKCHVKKKDIRKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain