SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157026

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene157026
ATCCATCAACAAACAACCATGTCATTCACAGGTAAAACTCTAAAGCTGAACAACGGAGTGGAGATGCCCGTCTTCGGTCTCGGCACCTGGCAAAGCAAACCAGGAGAAGTGGCCAAAGCAGTAGAGGCAGCCCTTCGTCTCGGATATCGCCACATCGACTGCGCTCACATCTACGGAAATGAAGCAGAAGTGGGAGAAGTCTTCGGCCGCCTCTTCAATGACGCCAAGTCAGGAATCAAGAGAGAAGATGTCTGGATCACTTCCAAGTTGTGGAACACATCACATCAGAGAGACAGAGTTCGTCCTGCCATCGAGACTACTCTCAAA

Ace file of the UniGene sp_v3.0_unigene157026

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxidoreductase, aldo/keto reductase family n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZM9_9GAMM	-	-	2.0e-27	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Aldose reductase	-	-	5.454e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde reductase.	EC:1.1.1.21	-	8.084e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	8.084e-11	%
Sma3	Fructose and mannose metabolism	00051	8.084e-11	%
Sma3	Galactose metabolism	00052	8.084e-11	%
Sma3	Glycerolipid metabolism	00561	8.084e-11	%
Sma3	Pyruvate metabolism	00620	8.084e-11	%
Sma3	Metabolic pathways	01100	8.084e-11	%

Source	Gene names
Sma3	At2g37770; At2g37790; CHLREDRAFT_158244; GSVIVT00021381001; GSVIVT00021382001; LCI28; MICPUN_80447; Os01g0847600; Os01g0847700; OsI_04426; OsI_04428; OsI_20196; OsJ_26532; OsJ_26534; P0005H10.15; P0005H10.17; PHATRDRAFT_41470; PHYPADRAFT_190133; POPTRDRAF

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein chr2:15834888-15836659 FORWARD LENGTH=315	7.0e-30	56%
RefSeq	Arabidopsis thaliana	NP_181313.3	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]	6.0e-30	56%
RefSeq	Populus trichocarpa	XP_002308181.1	predicted protein, partial [Populus trichocarpa]	7.0e-27	53%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS31

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 103 - 303

Fln protein: MSFTGKTLKLNNGVEMPVFGLGTWQSKPGEVAKAVEAALRLGYRHIDCAHIYGNEAEVGEVFGRLFNDAKSGIKREDVWITSKLWNTSHQRDRVRPAIETTLK

Protein Length: 104

Fln nts: ATCCATCAACAAACAACC_-_ATGTCATTCACAGGTAAAACTCTAAAGCTGAACAACGGAGTGGAGATGCCCGTCTTCGGTCTCGGCACCTGGCAAAGCAAACCAGGAGAAGTGGCCAAAGCAGTAGAGGCAGCCCTTCGTCTCGGATATCGCCACATCGACTGCGCTCACATCTACGGAAATGAAGCAGAAGTGGGAGAAGTCTTCGGCCGCCTCTTCAATGACGCCAAGTCAGGAATCAAGAGAGAAGATGTCTGGATCACTTCCAAGTTGTGGAACACATCACATCAGAGAGACAGAGTTCGTCCTGCCATCGAGACTACTCTCAAA

Fln Alignment:

HLKU4M004JMJQ0___TLKLNNGVEMPVFGLGTWQSKPGEVAKAVEAALRLGYRHIDCAHIYGNEAEVGEVFGRLFNDAKSGIKREDVWITSKLWNTSHQRDRVRPAIETTLK
A9NS31________________SFELNTGAKIPAVGLGTWQAPPGVVGDAVKTAIKVGYRHIDCARAYANEKEIGCALTEVFH--SNAVKREDLWITSKIRVSDCAPEDVPKALDCTLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain