SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156890

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene156890
TACCGCTGCTCTTCGTGTAACTGATGGTGCTTTAGTTGTCGTAGATTGTGTTGAAGGAGTGTGCGTACAAACTGAAACTGTACTCAGACAAGCCCTTGGAGAACGTATCAAACCTGTTGTTATGGTTAACAAGGTTGATAGAGCTCTTCTTGAATTACAACTTGAAGGAGAGGATGCTTATTTATCTTTTCAAAGAACCATTGAATCTGTGAACGTCGTTATTTCCACCTACGAAGACGAATTGCTCGGTGATGTCCAAGTATATCCTTCCAATGGTACTGTTGCTTTTGGAAGTGGTCTTCACGGATGGGGATTTACCTTGACTCGATTTGCTGATATGTACGCAGCAAAATTCGGAGTTCCTCGAGAAAAGATGGTAAAACGACTTTGGGGTGATAATTTCTTTGATGCTAAAGACC

Ace file of the UniGene sp_v3.0_unigene156890 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 2 n=25 Tax=Saccharomycetaceae RepID=EF2_ASHGO	-	-	71%
FL-Next	sp=Elongation factor 2; Beta vulgaris (Sugar beet).	-	-	73%
Sma3	Elongation factor 2	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein-synthesizing GTPase.	EC:3.6.5.3	-	7.848e-06	-

Source	Gene names
Sma3	At1g56070; At1g56070/T6H22.13; At1g56075; CHLREDRAFT_24524; EEF2; EF-2; EF-TU; EF2; EFG2; GSVIVT00005644001; GSVIVT00025738001; H0613H07.5; MICPUCDRAFT_27460; MICPUCDRAFT_47165; MICPUN_112653; OSJNBa0020P07.3; OSTLU_52010; Os01g0723000; Os01g0742200; Os02

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56070.1	LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein chr1:20968245-20971077 REVERSE LENGTH=843	74%
RefSeq	Arabidopsis thaliana	NP_849818.1	elongation factor EF-2 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002310687.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23755

Fln msg: Distance to subject end: 589 aas, your sequence is shorter than subject: 139 - 843

Fln protein: TAALRVTDGALVVVDCVEGVCVQTETVLRQALGERIKPVVMVNKVDRALLELQLEGEDAYLSFQRTIESVNVVISTYEDELLGDVQVYPSNGTVAFGSGLHGWGFTLTRFADMYAAKFGVPREKMVKRLWGDNFFDAKD

Protein Length: 140

Fln nts: TACCGCTGCTCTTCGTGTAACTGATGGTGCTTTAGTTGTCGTAGATTGTGTTGAAGGAGTGTGCGTACAAACTGAAACTGTACTCAGACAAGCCCTTGGAGAACGTATCAAACCTGTTGTTATGGTTAACAAGGTTGATAGAGCTCTTCTTGAATTACAACTTGAAGGAGAGGATGCTTATTTATCTTTTCAAAGAACCATTGAATCTGTGAACGTCGTTATTTCCACCTACGAAGACGAATTGCTCGGTGATGTCCAAGTATATCCTTCCAATGGTACTGTTGCTTTTGGAAGTGGTCTTCACGGATGGGGATTTACCTTGACTCGATTTGCTGATATGTACGCAGCAAAATTCGGAGTTCCTCGAGAAAAGATGGTAAAACGACTTTGGGGTGATAATTTCTTTGATGCTAAAGACC

Fln Alignment:

HLKU4M004JA9IZ___TAALRVTDGALXXXXXXXXXXVQTETVLRQALGERIKPVVMVNKVDRALLELQLEGEDAYLSFQRTIESVNVVISTYEDELLGDVQVYPSNGTVAFGSGLHGWGFTLTRFADMYAAKFGVPREKMVKRLWGDNFFD
O23755________________TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYTTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLSNFAKMYASKFGVDESKMMERLWGENFFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain