SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156862

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene156862
AGCCAAGGTCGTTGTTACGGACCTCGATGCAGCCAAGTCCGAAAAGATCGTTGCGGAGATCAAGTCAGAGGGAGGCGTTGCGATTTCTGTTCCTGGAGACGTAACTGCCGCCGAGTTTCCCGACAGACTCATCAAGGAGACTATCAAGGCCTTTGGCAAAATCAACATCATCGTCAACAACGCGGGATACACGTGGGACGGAATCATGCACAAGATGACCGACAAGCAATGGGAAGCCATGCTTCTTGTGCACAACACTGCTCCATTCCGCATCGTCCGCGCTGCCGCTCCTTACATGAGAGATGCTGC

Ace file of the UniGene sp_v3.0_unigene156862

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-Oxoacyl (Acyl-carrier protein) reductase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJC9_DESAA	-	-	1.0e-30	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	CHLREDRAFT_132065; RCOM_1902270;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR50

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 102 - 328

Fln protein: AKVVVTDLDAAKSEKIVAEIKSEGGVAISVPGDVTAAEFPDRLIKETIKAFGKINIIVNNAGYTWDGIMHKMTDKQWEAMLLVHNTAPFRIVRAAAPYMRDA

Protein Length: 103

Fln nts: AGCCAAGGTCGTTGTTACGGACCTCGATGCAGCCAAGTCCGAAAAGATCGTTGCGGAGATCAAGTCAGAGGGAGGCGTTGCGATTTCTGTTCCTGGAGACGTAACTGCCGCCGAGTTTCCCGACAGACTCATCAAGGAGACTATCAAGGCCTTTGGCAAAATCAACATCATCGTCAACAACGCGGGATACACGTGGGACGGAATCATGCACAAGATGACCGACAAGCAATGGGAAGCCATGCTTCTTGTGCACAACACTGCTCCATTCCGCATCGTCCGCGCTGCCGCTCCTTACATGAGAGATGCTGC

Fln Alignment:

HLKU4M004JMAAN___KSEKIVAEIKSEGGVAISVPGDVTAAEFPDRLIKETIKAFGKINIIVNNAGYTWDGIMHKMTDKQWEAMLLVHNTAPFRIVRAAAPYM
C0PR50________________EAEDVSRQIEAAGGSAIIYGGDMSKEADVEGMFKTAIDSWGTIDILVNNAGITRDTLMMRMTRSQWQDVIDLNLTGVFLCTQAAAKVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain