SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156860

Length: 451 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene156860
TGGACCTTTCCATTTGCGCGCTCCTTCACGCATTCTCTGGAGAACCATCAGAGGCATGCTCCCACACAAGACTGCTCGTGGTGCTGCTGCCCTCAAGAGACTCAAGGTCTTCGAAGGTGTCCCACCACCCTACGATAGACTCAAGAGAGTCGTTGTCCCAGAGGCCCTCAGAGTTCTCCGCCTCCAACCACACCGTAAATACACCGTTCTTGGCAGACTTTCCCAAGAGATGGGATGGAGACACAGAGCCACCGTCGCCACCCTCGAAGCCAAGAGAAAGGTCCGCTCGGCTGCCTGGTACAAGCAGAGAAAGCAAGTCGTCAACCTCAGAAGCAAGGCTCTCGCTGCTGCTGCTCCTCGTCTTGCCGAAAGAGGAATCACTGCTGCTCTCCAAGCTGCTGGTCACTAGATTTCTTAATCGCAAGAAAAGTAAAACCATTCCGCTTGTCCC

Ace file of the UniGene sp_v3.0_unigene156860 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L16a n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C119_9EUKA	-	-	1.0e-39	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	60S ribosomal protein L13a	-	-	8.606e-21	-

Source	Gene names
Sma3	170F8.7; At3g07110; At3g24830; At4g13170; At5g48760; CHLREDRAFT_162845; F17N18.60; GSVIVT00019003001; GSVIVT00031707001; GSVIVT00033857001; K24G6.9; K7P8.12; LOC_Os03g54860; LOC_Os03g54890; MICPUCDRAFT_30605; MICPUN_93104; OJ1567_G09.119; OSJNBb0081K01.12

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	0.0	-
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24830.1	Ribosomal protein L13 family protein chr3:9064613-9065871 FORWARD LENGTH=206	66%
RefSeq	Arabidopsis thaliana	NP_189127.1	60S ribosomal protein L13a-2 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002323772.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg: your sequence is shorter than subject: 136 - 206

Fln protein: GPFHLRAPSRILWRTIRGMLPHKTARGAAALKRLKVFEGVPPPYDRLKRVVVPEALRVLRLQPHRKYTVLGRLSQEMGWRHRATVATLEAKRKVRSAAWYKQRKQVVNLRSKALAAAAPRLAERGITAALQAAGH*

Protein Length: 137

Fln nts: TGGACCTTTCCATTTGCGCGCTCCTTCACGCATTCTCTGGAGAACCATCAGAGGCATGCTCCCACACAAGACTGCTCGTGGTGCTGCTGCCCTCAAGAGACTCAAGGTCTTCGAAGGTGTCCCACCACCCTACGATAGACTCAAGAGAGTCGTTGTCCCAGAGGCCCTCAGAGTTCTCCGCCTCCAACCACACCGTAAATACACCGTTCTTGGCAGACTTTCCCAAGAGATGGGATGGAGACACAGAGCCACCGTCGCCACCCTCGAAGCCAAGAGAAAGGTCCGCTCGGCTGCCTGGTACAAGCAGAGAAAGCAAGTCGTCAACCTCAGAAGCAAGGCTCTCGCTGCTGCTGCTCCTCGTCTTGCCGAAAGAGGAATCACTGCTGCTCTCCAAGCTGCTGGTCACTAG___ATTTCTTAATCGCAAGAAAAGTAAAACCATTCCGCTTGTCCC

Fln Alignment:

HLKU4M004I27Z8___GPFHLRAPSRILWRTIRGMLPHKTARGAAALKRLKVFEGVPPPYDRLKRVVVPEALRVLRLQPHRKYTVLGRLSQEMGWRHRATVATLEAKRKVRSAAWYKQRKQV
A9NNL7________________GPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQL

SSRs (tot: 1)

Start position	End position	Sequence	Length
97	108	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain