SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156808

Length: 250 nt

UniGene Fasta

>sp_v3.0_unigene156808
TGACGGTGAATCCACTGTGGACTGCTCCAAAGTCAAGACTCTCCCCAACGTTGACATTGTCATCTCTGGAAAGACCTTCACTCTCACCCCTGAACAATACATTATCAACATCTCCTCTGCTGGTCAAGAGATTTGCCTCTCTGGCTTCATTGGACTCGATATCCCTGCTCCCTATGGTCCTCTGTGGATTTTGGGAGATGTTTTCATGGGAGCTTATTACACCTCTTTCGATTTTGGTAACAAGAGAGTT

Ace file of the UniGene sp_v3.0_unigene156808

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cathepsin D n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2TYL4_9EUKA	-	-	4.0e-27	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Aspartic proteinase	-	-	2.804e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	8.575e-11	-
Sma3		EC:3.4.23.4-	-	2.413e-16	-

Source	Gene names
Sma3	AT1G11910; AT1G62290; At1g11910; At1g62290; CYPRO1; F12F1.24; GSVIVT00006869001; GSVIVT00022513001; GSVIVT00022515001; GSVIVT00027288001; LOC_Os05g04630; LOC_Os05g49200; MICPUCDRAFT_51434; MICPUN_106372; MtrDRAFT_AC157894g38v2; NaAP1; NaAP2; NaAP3; NaAP4;

Source	GOs	Term	Type	Identity
Sma3	lysosome	GO:0005764	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	sphingolipid metabolic process	GO:0006665	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin	IPR008373	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62290.1	Saposin-like aspartyl protease family protein chr1:23010107-23012681 REVERSE LENGTH=513	2.0e-28	56%
RefSeq	Arabidopsis thaliana	NP_176419.2	phytepsin [Arabidopsis thaliana]	3.0e-28	56%
RefSeq	Populus trichocarpa	XP_002319454.1	predicted protein [Populus trichocarpa]	1.0e-29	54%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1V4

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 83 - 284

Fln protein: DGESTVDCSKVKTLPNVDIVISGKTFTLTPEQYIINISSAGQEICLSGFIGLDIPAPYGPLWILGDVFMGAYYTSFDFGNKRV

Protein Length: 84

Fln nts: TGACGGTGAATCCACTGTGGACTGCTCCAAAGTCAAGACTCTCCCCAACGTTGACATTGTCATCTCTGGAAAGACCTTCACTCTCACCCCTGAACAATACATTATCAACATCTCCTCTGCTGGTCAAGAGATTTGCCTCTCTGGCTTCATTGGACTCGATATCCCTGCTCCCTATGGTCCTCTGTGGATTTTGGGAGATGTTTTCATGGGAGCTTATTACACCTCTTTCGATTTTGGTAACAAGAGAGTT

Fln Alignment:

HLKU4M004J1BWP___DGESTVDCSKVKTLPNVDIVISGKTFTLTPEQYIINISSAGQEICLSGFIGLDIPAPYGPLWILGDVFMGAYYTSFDFGNKRV
A9P1V4________________NGESVVDCDQVSSMPTVSFSIGNKTFSLTPDQYILQVGEGSVAQCVSGFMGLDVSPPLGPIWILGDIFMGVYHTVFDYGNSRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain