SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156687

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene156687
CAGAGGAATAGACGTAGTGAGAGAAAAGATCAAGATGTTCGCCAAGAAAAAAGTGACCCTCCCTCCTGGAAGACACAAAGTAGTCATTCTTGACGAAGCAGACAACATGACAAACGCAGCGCAACAAGCACTAAGAAGAACGATGGAGATCTACTCGGACACAACGAGATTCGCTTTGGCTTGCAACTTGTCCAACAAAATCATTGAGCCCATCCAGAGTCGTTGTGCCGTTCTTAGGTACACCAGGTTGGAAGACGAGCAGATGTTGAAGA

Ace file of the UniGene sp_v3.0_unigene156687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA replication factor C subunit Rfc4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CCU6_9EUKA	-	-	1.0e-36	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Replication factor c, subunit 2	-	-	2.409e-08	-

Source	Gene names
Sma3	At1g21690; At1g21690/F8K7.11; At1g63160; CHLREDRAFT_185418; CHLREDRAFT_195837; F16M19.6; F8K7.11; GSVIVT00001122001; GSVIVT00015431001; LOC_Os12g07720; MICPUCDRAFT_14557; MICPUCDRAFT_70656; MICPUN_54938; MICPUN_95914; OSIGBa0139P06.6; OSJNBb0032E06.6; OST

Source	GOs	Term	Type	Identity
Sma3	DNA replication factor C complex	GO:0005663	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA clamp loader activity	GO:0003689	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	Replication factor C, C-terminal domain	IPR013748	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63160.1	RFC2 replication factor C 2 chr1:23422068-23423771 REVERSE LENGTH=333	4.06377e-44	80%
RefSeq	Arabidopsis thaliana	NP_176504.1	replication factor C 2 [Arabidopsis thaliana]	5.04467e-44	80%
RefSeq	Populus trichocarpa	XP_002304476.1	predicted protein [Populus trichocarpa]	2.94273e-44	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9V5

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 90 - 335

Fln protein: RGIDVVREKIKMFAKKKVTLPPGRHKVVILDEADNMTNAAQQALRRTMEIYSDTTRFALACNLSNKIIEPIQSRCAVLRYTRLEDEQMLK

Protein Length: 91

Fln nts: CAGAGGAATAGACGTAGTGAGAGAAAAGATCAAGATGTTCGCCAAGAAAAAAGTGACCCTCCCTCCTGGAAGACACAAAGTAGTCATTCTTGACGAAGCAGACAACATGACAAACGCAGCGCAACAAGCACTAAGAAGAACGATGGAGATCTACTCGGACACAACGAGATTCGCTTTGGCTTGCAACTTGTCCAACAAAATCATTGAGCCCATCCAGAGTCGTTGTGCCGTTCTTAGGTACACCAGGTTGGAAGACGAGCAGATGTTGAAGA

Fln Alignment:

HLKU4M004JTX0P___RGIDVVREKIKMFAKKKVTLPPGRHKVVILDEADNMTNAAQQALRRTMEIYSDTTRFALACNLSNKIIEPIQSRCAVLRYTRLEDEQML
D5A9V5________________RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain