SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156648

Length: 486 nt

UniGene Fasta

>sp_v3.0_unigene156648
TATTCAAATCTGCAGGCAAGTCTGGCTTCCCCAAAGTCGAGGTTCCCTCCCGTCAGCCGGACAAGATCGTCGAGCAGAAGACCCGTGTCGACCAGGCCGTCCTCTACCGCCTCTCTGGAGACTACAACCCCCTCCACATCGACCCCGATATGGCCACTACCTTCGGCTTCAAGAAGCCCATCCTCCACGGCCTCTGCAGCATGGGTCACTCTGCCAGACACGTGCTGGGAGCGTTCGCCAACAATGACGCCACCCGCTTCAAATCTCTCAAGGTCCGGTTCTCTAAGCCCGTCCTCCCGGGTGAGACCCTGGTCACCAAGATGTGGCAAGAGGGAAACAAGATCATCTTTATCACTGAGGTGAAGGAGACTGGCAAGGTGTGCATGGACAGCTGCTTCGTGGAGCTGCATGCGCCTAAGGCCAAGCTCTAAGCACAGCATTCTTCATGAATGTTTGTGGTTCTTTTAATCGTAAACTGCATTTCAC

Ace file of the UniGene sp_v3.0_unigene156648

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to 17-beta-hydroxysteroid dehydrogenase type 4 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4625E	-	-	9.99995e-41	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	At1g76150/T23E18_38	-	-	8.772e-06	-

Source	Gene names
Sma3	At1g76150; CHLREDRAFT_170021; POPTRDRAFT_652170;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	3R-hydroxyacyl-CoA dehydratase activity	GO:0080023	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	fatty acid beta-oxidation, unsaturated, even number	GO:0033542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	MaoC-like dehydratase	IPR002539	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76150.1	ECH2, ATECH2 enoyl-CoA hydratase 2 chr1:28575236-28577637 REVERSE LENGTH=309	1.0e-34	47%
RefSeq	Arabidopsis thaliana	NP_177742.2	enoyl-CoA hydratase 2 [Arabidopsis thaliana]	1.0e-34	47%
RefSeq	Populus trichocarpa	XP_002307764.1	predicted protein [Populus trichocarpa]	6.0e-33	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ8

Fln msg: your sequence is shorter than subject: 143 - 311

Fln protein: FKSAGKSGFPKVEVPSRQPDKIVEQKTRVDQAVLYRLSGDYNPLHIDPDMATTFGFKKPILHGLCSMGHSARHVLGAFANNDATRFKSLKVRFSKPVLPGETLVTKMWQEGNKIIFITEVKETGKVCMDSCFVELHAPKAKL*

Protein Length: 144

Fln nts: TATTCAAATCTGCAGGCAAGTCTGGCTTCCCCAAAGTCGAGGTTCCCTCCCGTCAGCCGGACAAGATCGTCGAGCAGAAGACCCGTGTCGACCAGGCCGTCCTCTACCGCCTCTCTGGAGACTACAACCCCCTCCACATCGACCCCGATATGGCCACTACCTTCGGCTTCAAGAAGCCCATCCTCCACGGCCTCTGCAGCATGGGTCACTCTGCCAGACACGTGCTGGGAGCGTTCGCCAACAATGACGCCACCCGCTTCAAATCTCTCAAGGTCCGGTTCTCTAAGCCCGTCCTCCCGGGTGAGACCCTGGTCACCAAGATGTGGCAAGAGGGAAACAAGATCATCTTTATCACTGAGGTGAAGGAGACTGGCAAGGTGTGCATGGACAGCTGCTTCGTGGAGCTGCATGCGCCTAAGGCCAAGCTCTAA___GCACAGCATTCTTCATGAATGTTTGTGGTTCTTTTAATCGTAAACTGCATTTCAC

Fln Alignment:

HLKU4M004I9RD7___VEVPSRQPDKIVEQKTRVDQAVLYRLSGDYNPLHIDPDMATTFGFKKPILHGLCSMGHSARHVLGAFANNDATRFKSLKVRFSKPVLPGETLVTKMWQEGNKIIFITEVKETGKVCMDSCFVELHAPKA
B8LKQ8________________VTIPKDIPFAIHEDCTQQSQALLYRLSGDYNPLHSDPMIANLAGFSRPILHGLCTLGFAVRAVIKCCCGGQPSLVKSVQGRFLMHVYPGETLITEMWRSETRIIYQTKVKEREKVVLSGAVLMNHVSSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain