SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156646

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene156646
ATTGGTGCTGGAACGAATAATTTAGAATTGCTGGTTTATTACGTCAATTATCTGCTTATTATTGCAAGGATTTTGATGTTCTTTTTGTTATTCGTATTGCTCAAGGTTTATTACATTTGGGTAAAGGTTTACTTACTTTAAATCCTTTCCATTGTCATGGTAATTTGATGTCTTCTGTTGCTGTTTCTGGTATATTGGGTGTTATGCATGCTTGTTTTGATTTTTCTGCTGTCATCCATTCGGAAGGACATTATTTATTGTATTTGTTTGCTGCTGCCATGCAACCAAGAATGTTGATGTTGTTGGACG

Ace file of the UniGene sp_v3.0_unigene156646

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana] sp\|Q6XJG8.1\|RPN1B_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1B; AltName: Full=26S proteasome regulatory subunit RPN1 B; Short=AtRPN1b; AltName: Full=26S proteasome reg	-	-	2.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative 26S proteasome regulatory subunit S2	-	-	7.414e-13	-

Source	Gene names
Sma3	At2g20580; CHLREDRAFT_137945; GSVIVT00018639001; MICPUCDRAFT_32266; MICPUN_90309; OJ1008_C03.11; Os02g0146700; Os06g0699900; Os09g0326800; OsI_05840; OsI_24349; OsI_30901; OsJ_05368; OsJ_22525; OsJ_28885; OsRPN1b; P0468G03.16; P0692F07.34; P0706E03.1; PHA

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA-dependent ATPase activity	GO:0008094	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	DNA metabolic process	GO:0006259	Biological Process	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001553	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	IPR016643	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28470.1	RPN1B, ATRPN1B 26S proteasome regulatory subunit S2 1B chr4:14067082-14072357 REVERSE LENGTH=891	7.0e-22	54%
RefSeq	Arabidopsis thaliana	NP_194576.5	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana]	9.0e-22	54%
RefSeq	Populus trichocarpa	XP_002310411.1	predicted protein [Populus trichocarpa]	4.0e-22	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 79 aas, your sequence is shorter than subject: 102 - 892

Fln protein: WCWNE*FRIAGLLRQLSAYYCKDFDVLFVIRIAQGLLHLGKGLLTLNPFHCHGNLMSSVAVSGILGVMHACFDFSAVIHSEGHYLLYLFAAAMQPRMLMLLD

Protein Length: 103

Fln nts: ATTGGTGCTGGAACGAATAATTTAGAATTGCTGGTTTATTACGTCAATTATCTGCTTATTATTGCAAGGATTTTGATGTTCTTTTTGTTATTCGTATTGCTCAAGGTTTATTACATTTGGGTAAAGGTTTACTTACTTTAAATCCTTTCCATTGTCATGGTAATTTGATGTCTTCTGTTGCTGTTTCTGGTATATTGGGTGTTATGCATGCTTGTTTTGATTTTTCTGCTGTCATCCATTCGGAAGGACATTATTTATTGTATTTGTTTGCTGCTGCCATGCAACCAAGAATGTTGATGTTGTTGGACG

Fln Alignment:

HLKU4M004JOUXA___RIAGLLRQLSAYYCKDFDVLFVIRIAQXXXXXXXXXXXXNPFHCHGNLMSSVAVSGILGVMHACFDFSAVIHSEGHYLLYLFAAAMQPRMLMLLD
B8LRR7________________RIAGMLRNLSSYYYKDPSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSHSALAGIITLLHSCLDMKSIILGKYHYVLYFLVLAMQPRMLLTVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain