SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156600

Length: 273 nt

UniGene Fasta

>sp_v3.0_unigene156600
GTCGACAAGCCTTTGAGACTTCCCCTTCAAGACGTCTACAAGATCGGTGGTATCGGAACTGTCCCCGTCGGTAGAGTCGAAACTGGTATCCTCAAGCCCGGTGTTACCGTTTACTTCGCTCCTTCCAACGTCTCCACTGAAGTTAAATCCGTCGAAATGCATCACGAAGCTGTCCAAGAAGCTATCCCCGGTGACAACGTCGGTTTCAACATCAAGAACGTCGCTGTTAAGGACATCAGAAGAGGTAACGTCTGCGGTGATGCCAAGAACGAT

Ace file of the UniGene sp_v3.0_unigene156600

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-alpha (Fragment) n=1 Tax=Colpoda inflata RepID=O96974_9CILI	-	-	2.94273e-44	93%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Elongation factor 1-alpha	-	-	0.0	-

Source	Gene names
Sma3	AcoEF1a; EF-1-alpha; EF-1alpha; EF1; EF1-A; EF1-a1; EF1A; EF1A1; EF1A2; EF1A3; EF1A4; EF1A5; EF1A7; EF1A8; EF1A9; EF1a; GSVIVT00024491001; GSVIVT00024496001; LOC_Os03g08010; LOC_Os03g08050; LOC_Os03g08060; NnEF1a; NpeEF1A; Os03g0177400; Os03g0178000; OsI_

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	9.94922e-44	75%
RefSeq	Arabidopsis thaliana	NP_001032107.1	Elongation factor 1-alpha [Arabidopsis thaliana]	8.96831e-44	75%
RefSeq	Populus trichocarpa	XP_002334746.1	predicted protein, partial [Populus trichocarpa]	5.60519e-45	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP0

Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 91 - 447

Fln protein: VDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGVTVYFAPSNVSTEVKSVEMHHEAVQEAIPGDNVGFNIKNVAVKDIRRGNVCGDAKND

Protein Length: 92

Fln nts: GTCGACAAGCCTTTGAGACTTCCCCTTCAAGACGTCTACAAGATCGGTGGTATCGGAACTGTCCCCGTCGGTAGAGTCGAAACTGGTATCCTCAAGCCCGGTGTTACCGTTTACTTCGCTCCTTCCAACGTCTCCACTGAAGTTAAATCCGTCGAAATGCATCACGAAGCTGTCCAAGAAGCTATCCCCGGTGACAACGTCGGTTTCAACATCAAGAACGTCGCTGTTAAGGACATCAGAAGAGGTAACGTCTGCGGTGATGCCAAGAACGAT

Fln Alignment:

HLKU4M004H4FBC___DKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGVTVYFAPSNVSTEVKSVEMHHEAVQEAIPGDNVGFNIKNVAVKDIRRGNVCGDAKND
C0PTP0________________DKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain