SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156514

Length: 350 nt

UniGene Fasta

>sp_v3.0_unigene156514
GCTGCTGGAGTACCTCGATAGCATGAAAGCCCTCGAACGCAAGCTGAACGCGCCGTTCATGTTGCCCGTCAACGGCAAGTACCGCGACATGGGTACGATTGTGGAAGGCAAGATCGAAGCCGGTGTCGTTAAGAAGAACATGGGTCTAATCATGATGCCGAACAAGCAGAGTGTGGAAGCCTCAGCCTTGTACGGTGAGCAGGAGGAGGAAGTTCAAGTGGCGCAATGCGGTGACCAGGTGCGAATTCGCCTCAAGGGCATTGAAGAGGAGGATATTCTCCCTGGCTTTGTGTTGTGCTCGCCCAAGCGACTGGTACACACTGTGACCGAGTTCGAGGCTCAGATCCGCA

Ace file of the UniGene sp_v3.0_unigene156514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor Tu GTP binding domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QX62_COLGM	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Elongation factor Tu	-	-	7.268e-11	-

Source	Gene names
Sma3	CHLREDRAFT_118974; EFG3; MICPUCDRAFT_60100; MICPUN_53407;

Source	GOs	Term	Type	Identity
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_001031063.1	G1 to S phase transition protein [Arabidopsis thaliana]	3.0e-26	45%
RefSeq	Populus trichocarpa	XP_002319868.1	predicted protein, partial [Populus trichocarpa]	1.0e-26	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF8

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 116 - 466

Fln protein: LLEYLDSMKALERKLNAPFMLPVNGKYRDMGTIVEGKIEAGVVKKNMGLIMMPNKQSVEASALYGEQEEEVQVAQCGDQVRIRLKGIEEEDILPGFVLCSPKRLVHTVTEFEAQIR

Protein Length: 117

Fln nts: GCTGCTGGAGTACCTCGATAGCATGAAAGCCCTCGAACGCAAGCTGAACGCGCCGTTCATGTTGCCCGTCAACGGCAAGTACCGCGACATGGGTACGATTGTGGAAGGCAAGATCGAAGCCGGTGTCGTTAAGAAGAACATGGGTCTAATCATGATGCCGAACAAGCAGAGTGTGGAAGCCTCAGCCTTGTACGGTGAGCAGGAGGAGGAAGTTCAAGTGGCGCAATGCGGTGACCAGGTGCGAATTCGCCTCAAGGGCATTGAAGAGGAGGATATTCTCCCTGGCTTTGTGTTGTGCTCGCCCAAGCGACTGGTACACACTGTGACCGAGTTCGAGGCTCAGATCCGCA

Fln Alignment:

HLKU4M004JGSVV___LLEYLDSMKALERKLNAPFMLPVNGKYRDMGTIVEGKIEAGVVKKNMGLIMMPNKQSVEASALYGEQEEEVQVAQCGDQVRIRLKGIEEEDILPGFVLCSPKRLVHTVTEFEAQIR
B8LNF8________________LFEALDAIELPPRDPRGPFRMPLIDKFKDMGTVVMGKIESGTVRQGDSLFIMPNKVHVKVVAVYRE-SDELKYARPGENVRVKLSGVEEDDISTGFVLSSIAKPIHAVLEFDAQLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain