SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156476

Length: 410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene156476
TGTGGAGAATTTATGGCCAGCGGAGAGGAGGGAACCGCAGGAGCCATGAAGTGTGCAGCTTGCAACTGTCACCGAAACTTCCACAGGATGGAAGCTGAAGACGAAACCCTGTGCGCGTGCCATCGCATACGCAGGTTTATGGAGCCAACAAAAGAAACCCATTAAAAATCAAGAAAAAGGATTTTAATGTATACTGGAAAATGGATGTAGTATGGAATTTTGTACACTGATTCCAAATATAATGATCACGTTGGTTCCACAGATAATGATTTTGCAAGAATATGTAGACGATTGATTTCATAGGTATCTAAGAAGTCCATTGTCTACATTTCATTATCGAAATCAAAATATGTTGTAGCAACAAGAGAAGCATGTCCAAGTAGTTTGGTTACTAATATTGATAAGTGTTC

Ace file of the UniGene sp_v3.0_unigene156476 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI	-	-	6.0e-14	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative ZF-HD homeobox protein	-	-	9.451e-08	-

Source	Gene names
Sma3	At3g50890; F18B3.170; GSVIVT00003642001; GSVIVT00014603001; GSVIVT00024918001; GSVIVT00036961001; MIF1; OJ1005_D12.28; OJ1113_A10.19; Os08g0479400; Os09g0466400; OsI_29618; OsI_31693; OsJ_27685; OsJ_29679; PHYPADRAFT_112289; PHYPADRAFT_195291; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeodomain, ZF-HD class	IPR006455	-	-
Sma3	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	IPR006456	-	-
Sma3		IPR012287	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G28917.1	MIF2 mini zinc finger 2 chr3:10925014-10925316 FORWARD LENGTH=100	5.0e-13	64%
RefSeq	Arabidopsis thaliana	NP_974373.1	mini zinc finger 2 [Arabidopsis thaliana]	7.0e-13	64%
RefSeq	Populus trichocarpa	XP_002306048.1	predicted protein [Populus trichocarpa]	1.0e-15	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYD8

Fln msg: your sequence is shorter than subject: 55 - 139

Fln protein: CGEFMASGEEGTAGAMKCAACNCHRNFHRMEAEDETLCACHRIRRFMEPTKETH*

Protein Length: 56

Fln nts: TGTGGAGAATTTATGGCCAGCGGAGAGGAGGGAACCGCAGGAGCCATGAAGTGTGCAGCTTGCAACTGTCACCGAAACTTCCACAGGATGGAAGCTGAAGACGAAACCCTGTGCGCGTGCCATCGCATACGCAGGTTTATGGAGCCAACAAAAGAAACCCATTAA___AAATCAAGAAAAAGGATTTTAATGTATACTGGAAAATGGATGTAGTATGGAATTTTGTACACTGATTCCAAATATAATGATCACGTTGGTTCCACAGATAATGATTTTGCAAGAATATGTAGACGATTGATTTCATAGGTATCTAAGAAGTCCATTGTCTACATTTCATTATCGAAATCAAAATATGTTGTAGCAACAAGAGAAGCATGTCCAAGTAGTTTGGTTACTAATATTGATAAGTGTTC

Fln Alignment:

HLKU4M004H5JG7___CGEFMASGEEGTAGAMKCAACNCHRNFHRMEAEDETLCACHRIR
A9NYD8________________CGEFMASGEEGTAAAMKCAACNCHRNFHRREAENETLCDCHRIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain