SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156460

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene156460
AGTGATAATATCTAAGTAATATCTCCAAAATAGCAACATGGGACGCATGCATTCTCAAGGCAAGGGTATCTCGGGCTCAGCCCTCCCTTTCAGAAGAAAACCACCAAAATGGACAACAATCACTCCTGCTGCAGTTGTTGAACTCATCATCAAGCTCGCCAAAAAG

Ace file of the UniGene sp_v3.0_unigene156460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RS13_AGABI 40S RIBOSOMAL PROTEIN S13 n=2 Tax=Ustilaginaceae RepID=Q4PGV5_USTMA	-	-	3.0e-09	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	Gene names
Sma3	PHYPADRAFT_109710; PHYPADRAFT_175978; PHYPADRAFT_214095;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S15	IPR000589	-	0.0	-
Sma3	Ribosomal protein S13/S15, N-terminal	IPR012606	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60770.1	Ribosomal protein S13/S15 chr3:22460525-22461656 REVERSE LENGTH=151	5.0e-12	62%
RefSeq	Arabidopsis thaliana	NP_567104.1	40S ribosomal protein S13-1 [Arabidopsis thaliana]	6.0e-12	62%
RefSeq	Populus trichocarpa	XP_002301281.1	predicted protein [Populus trichocarpa]	2.0e-12	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRB2

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 43 - 151

Fln protein: MGRMHSQGKGISGSALPFRRKPPKWTTITPAAVVELIIKLAKK

Protein Length: 44

Fln nts: AGTGATAATATCTAAGTAATATCTCCAAAATAGCAAC_-_ATGGGACGCATGCATTCTCAAGGCAAGGGTATCTCGGGCTCAGCCCTCCCTTTCAGAAGAAAACCACCAAAATGGACAACAATCACTCCTGCTGCAGTTGTTGAACTCATCATCAAGCTCGCCAAAAAG

Fln Alignment:

HLKU4M004IJBNA___MGRMHSQGKGISGSALPFRRKPPKWTTITPAAVVELIIKLAKK
A9NRB2________________MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEDNICKFAKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain