SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156449

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene156449
TGCGCTTCATGGGCGGCGCGGGCTCCGGCCAGCACACGAAGATGGTCAATCAGATCCTCATCAGTACCATGATGATTGGTGTGTGCGAAGGTTTGATCTATGGTCACAAGGCCGGCCTCGATCTGGACCAAGTCATCGCTGCCGTGGGTGCGGGTGCTGCGGGCTCCTGGACCATCAACAATTTGGGCCCCCGCATCGTTA

Ace file of the UniGene sp_v3.0_unigene156449

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxyisobutyrate dehydrogenase [Rhodopirellula baltica SH 1] emb\|CAD73423.1\| 3-hydroxyisobutyrate dehydrogenase [Rhodopirellula baltica SH 1]	-	-	9.0e-18	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29120.1	6-phosphogluconate dehydrogenase family protein chr4:14350861-14351865 FORWARD LENGTH=334	9.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_194641.1	3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana]	1.0e-11	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ37

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 66 - 300

Fln protein: RFMGGAGSGQHTKMVNQILISTMMIGVCEGLIYGHKAGLDLDQVIAAVGAGAAGSWTINNLGPRIV

Protein Length: 67

Fln nts: TGCGCTTCATGGGCGGCGCGGGCTCCGGCCAGCACACGAAGATGGTCAATCAGATCCTCATCAGTACCATGATGATTGGTGTGTGCGAAGGTTTGATCTATGGTCACAAGGCCGGCCTCGATCTGGACCAAGTCATCGCTGCCGTGGGTGCGGGTGCTGCGGGCTCCTGGACCATCAACAATTTGGGCCCCCGCATCGTTA

Fln Alignment:

HLKU4M004JFZXX___FMGGAGSGQHTKMVNQILISTMMIGVCEGLIYGHKAGLDLDQVIXXXXXXXXXSWTINNLGPRIV
A9NZ37________________YMGGPGLGQCTKLGNQITIASTMVGLVEGMVYAHKAGLDVEMYIKAISAGAAGSRSLDLYADRIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain