SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156431

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene156431
CAACATGTTTCTGACACGGAGTGAATACGACCGCGGTGTGAACACCTTTTCACCTGAGGGTCGTCTCTTCCAGGTCGAATATGCCGTAGAAGCCATCAAGCTCGGCTCAACCGCTATCGGTATCATGACTTCTGAAGGTGTTGTCCTCGCCGTTGAAAAGCGAGTCACCTCGCCCTTGATTGAGGCGAACAGTATTCACAAGATTCTGAAGCTGGACGATCACATCGGCTGTGCCATGAGTGGTTTGGTTGGCGACGCCCGAACGCTGATTGAGCACGCCCGTGTGGAGACGCAGCACTACTGGTTCCTTTACGATGAAAAGATGTCAGTGCAGTCAACAGCGCAGAGTATATGTGATCTGGCATTGGATTTTGGCGCGGGCACAATGGCTCGACCTTACGGTGTTGCTCTTCTCGTAGCAGGCGTGGATCAGCGCGGTCCCGTTCTGTATCACA

Ace file of the UniGene sp_v3.0_unigene156431

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to proteasome alpha 5 subunit n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000583F3C	-	-	0.0	71%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Proteasome subunit alpha type	-	-	1.663e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	3.09687e-43	-

Source	Gene names
Sma3	At1g53850; At3g14290; At3g22110; CHLREDRAFT_184847; GSVIVT00007080001; GSVIVT00014589001; GSVIVT00033998001; MICPUCDRAFT_49545; MICPUN_107684; MKA23.2; MLN21.8; OSTLU_119626; OSTLU_38146; Os11g0615700; OsI_12722; OsI_36813; OsJ_34630; Ot10g01180; PAC1; PA

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14290.1	PAE2 20S proteasome alpha subunit E2 chr3:4764364-4766381 FORWARD LENGTH=237	71%
RefSeq	Arabidopsis thaliana	NP_001077717.1	proteasome subunit alpha type-5-A [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002331192.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK23

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 150 - 237

Fln protein: MFLTRSEYDRGVNTFSPEGRLFQVEYAVEAIKLGSTAIGIMTSEGVVLAVEKRVTSPLIEANSIHKILKLDDHIGCAMSGLVGDARTLIEHARVETQHYWFLYDEKMSVQSTAQSICDLALDFGAGTMARPYGVALLVAGVDQRGPVLYH

Protein Length: 151

Fln nts: CAAC_-_ATGTTTCTGACACGGAGTGAATACGACCGCGGTGTGAACACCTTTTCACCTGAGGGTCGTCTCTTCCAGGTCGAATATGCCGTAGAAGCCATCAAGCTCGGCTCAACCGCTATCGGTATCATGACTTCTGAAGGTGTTGTCCTCGCCGTTGAAAAGCGAGTCACCTCGCCCTTGATTGAGGCGAACAGTATTCACAAGATTCTGAAGCTGGACGATCACATCGGCTGTGCCATGAGTGGTTTGGTTGGCGACGCCCGAACGCTGATTGAGCACGCCCGTGTGGAGACGCAGCACTACTGGTTCCTTTACGATGAAAAGATGTCAGTGCAGTCAACAGCGCAGAGTATATGTGATCTGGCATTGGATTTTGGCGCGGGCACAATGGCTCGACCTTACGGTGTTGCTCTTCTCGTAGCAGGCGTGGATCAGCGCGGTCCCGTTCTGTATCACA

Fln Alignment:

HLKU4M004I577V___MFLTRSEYDRGVNTFSPEGRLFQVEYAVEAIKLGSTAIGIMTSEGVVLAVEKRVTSPLIEANSIHKILKLDDHIGCAMSGLVGDARTLIEHARVETQHYWFLYDEKMSVQSTAQSICDLALDFGAG---TMARPYGVALLVAGVDQRGPVLYH
A9NK23________________MFLTRSEYDRGVNTFSPEGRLFQVEYAMEAIKLGSTAVGLKTKRGIILAVEKRITSPLLEPSSVEKIMEIDEHVGCAMSGLIADARTLVEHARVETQNHRFSYGEPMSTESTTQALCDLALRFGEGDEDSMSRPFGVSLLIAGHDENGPCLYY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain