SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156369

Length: 296 nt

UniGene Fasta

>sp_v3.0_unigene156369
ACGTGTAACCCGCTCGAGGCCGCGAGCAGCAAGAGCGATGGGCGAGTCGGAGTACTCCTTCTCGCTGACAACCTTCTCGCCCTCGGGCAAGCTCGTGCAGATTGAGTATGCCCTCCAGGCCGTATCTGGCGGCGCCACCTCGCTCGGCATCAAGGCCAAGAACGGAATCGTGCTCGCTACCGAGAAGAAGCCGCCGGCGCTGATGGACGAAACCACCTTCCAGAAGATTACGCTCCTCACGAGCCACATTGGCATGGTCTACTCTGGCATCGCGCCCGACTTCCGCGTGCTCGTTC

Ace file of the UniGene sp_v3.0_unigene156369

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=2 Tax=Chlamydomonadales RepID=A8JEW4_CHLRE	-	-	1.0e-27	74%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Proteasome subunit alpha type	-	-	6.335e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	9.843e-15	-

Source	Gene names
Sma3	AT1G16470; At1g16470; At1g79210; CHLREDRAFT_194387; GSVIVT00030187001; MA4_54B05.2; MICPUCDRAFT_49610; MICPUN_56599; OJ1626_B09.4; OSTLU_41065; Os02g0634900; OsI_08192; OsI_29423; OsJ_07639; OsJ_11088; Ot06g00230; PAB1; PAB2; PHATRDRAFT_49897; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	endopeptidase activity	GO:0004175	Molecular Function	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16470.1	PAB1 proteasome subunit PAB1 chr1:5623122-5625439 FORWARD LENGTH=235	7.0e-35	72%
RefSeq	Arabidopsis thaliana	NP_001031057.1	proteasome subunit alpha type-2-A [Arabidopsis thaliana]	9.0e-35	72%
RefSeq	Populus trichocarpa	XP_002318902.1	predicted protein [Populus trichocarpa]	2.0e-34	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLK4

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 86 - 235

Fln protein: MGESEYSFSLTTFSPSGKLVQIEYALQAVSGGATSLGIKAKNGIVLATEKKPPALMDETTFQKITLLTSHIGMVYSGIAPDFRVLV

Protein Length: 87

Fln nts: ACGTGTAACCCGCTCGAGGCCGCGAGCAGCAAGAGCG_-_ATGGGCGAGTCGGAGTACTCCTTCTCGCTGACAACCTTCTCGCCCTCGGGCAAGCTCGTGCAGATTGAGTATGCCCTCCAGGCCGTATCTGGCGGCGCCACCTCGCTCGGCATCAAGGCCAAGAACGGAATCGTGCTCGCTACCGAGAAGAAGCCGCCGGCGCTGATGGACGAAACCACCTTCCAGAAGATTACGCTCCTCACGAGCCACATTGGCATGGTCTACTCTGGCATCGCGCCCGACTTCCGCGTGCTCGTTC

Fln Alignment:

HLKU4M004I9LCI___MGESEYSFSLTTFSPSGKLVQIEYALQAVSGGATSLGIKAKNGIVLATEKK-PPALMDETTFQKITLLTSHIGMVYSGIAPDFRVLV
A9NLK4________________MGDSQYSFSLTTFSPSGKLVQIEHALMAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQKIQLLTSNIGVTYSGMGPDSRVLV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain