SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156365

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene156365
TGGACGATCACGATGAGGTTCTGGAGTACCTTTACAAAGTGCTAGTAGTGGGTGATATTGGTGTTGGGAAAACCAGTCTCATCAAACAATACGTTCATGGGATCTTTTCCCCTCATTTCAAGGCAACAATAGGTGTAGATTTTGCTTTGAAAGTCCTTAAATATGATCCTCGCACTTCAGTTAGAATTCAGTTGTGGGACATTGCAGGACAAGAGCAATATGGG

Ace file of the UniGene sp_v3.0_unigene156365

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab GTPase n=1 Tax=Dictyostelium fasciculatum RepID=F4PYB3_9MYCE	-	-	1.0e-19	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	GSVIVT00005411001; GSVIVT00019379001; Nt-rab7c; POPTRDRAFT_710660; POPTRDRAFT_831561; RCOM_0297010; VITISV_031882; rab7A; rab7B;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22740.1	RAB7, ATRABG3B, RAB75, RABG3B RAB GTPase homolog G3B chr1:8049247-8050494 FORWARD LENGTH=203	4.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_173688.1	Ras-related protein Rab7 [Arabidopsis thaliana]	6.0e-15	57%
RefSeq	Populus trichocarpa	XP_002300895.1	predicted protein [Populus trichocarpa]	1.0e-15	59%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR13

Fln msg: Distance to subject end: 135 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 74 - 206

Fln protein: DDHDEVLEYLYKVLVVGDIGVGKTSLIKQYVHGIFSPHFKATIGVDFALKVLKYDPRTSVRIQLWDIAGQEQYG

Protein Length: 75

Fln nts: TGGACGATCACGATGAGGTTCTGGAGTACCTTTACAAAGTGCTAGTAGTGGGTGATATTGGTGTTGGGAAAACCAGTCTCATCAAACAATACGTTCATGGGATCTTTTCCCCTCATTTCAAGGCAACAATAGGTGTAGATTTTGCTTTGAAAGTCCTTAAATATGATCCTCGCACTTCAGTTAGAATTCAGTTGTGGGACATTGCAGGACAAGAGCAATATGGG

Fln Alignment:

HLKU4M004JCN63___GDIGVGKTSLIKQYVHGIFSPHFKATIGVDFALKVLKYDPRTSVRIQLWDIAGQEQY
A9NR13________________GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain