SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156256

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene156256
AAAGAAATGGATTCATTGTTTTCAAGATTGCACGGCTCTGATTTTCTGTGCTTCCATGTCAGAATATGATATGAAATTGTACGAAGATGAGACAGTGAATCGAATGCATGAGTCGATCATGTTATTTGAAGAGATTTGTAATTGCCAGTGGTTTTCTGAAACATCGATTGTTTTGTTCTTGAACAAGAGTGATA

Ace file of the UniGene sp_v3.0_unigene156256

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C. briggsae CBR-GOA-1 protein n=1 Tax=Caenorhabditis briggsae RepID=UPI00002200F4	-	-	3.0e-22	70%
FL-Next	sp=Guanine nucleotide-binding protein alpha-1 subunit; Oryza sativa subsp. japonica (Rice).	-	-	0.0	53%

Source	Gene names
Sma3	Af12-aa; GPA1; SCGOA; THAPSDRAFT_36183; gpa1;

Source	GOs	Term	Type	Identity
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	guanyl nucleotide binding	GO:0019001	Molecular Function	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	-
Sma3	Fungal G-protein, alpha subunit	IPR002975	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26300.1	GPA1, GP ALPHA 1, ATGPA1 G protein alpha subunit 1 chr2:11198087-11200822 FORWARD LENGTH=383	1.0e-16	53%
RefSeq	Arabidopsis thaliana	NP_180198.1	guanine nucleotide-binding protein alpha-1 subunit [Arabidopsis thaliana]	2.0e-16	53%
RefSeq	Populus trichocarpa	XP_002308517.1	predicted protein [Populus trichocarpa]	6.0e-17	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DJ33

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 64 - 380

Fln protein: KKWIHCFQDCTALIFCASMSEYDMKLYEDETVNRMHESIMLFEEICNCQWFSETSIVLFLNKSD

Protein Length: 65

Fln nts: AAAGAAATGGATTCATTGTTTTCAAGATTGCACGGCTCTGATTTTCTGTGCTTCCATGTCAGAATATGATATGAAATTGTACGAAGATGAGACAGTGAATCGAATGCATGAGTCGATCATGTTATTTGAAGAGATTTGTAATTGCCAGTGGTTTTCTGAAACATCGATTGTTTTGTTCTTGAACAAGAGTGATA

Fln Alignment:

HLKU4M004JMGDH___KKWIHCFQDCTALIFCASMSEYDMKLYEDETVNRMHESIMLFEEICNCQWFSETSIVLFLNKSD
Q0DJ33________________RKWIHLFEGVNAVIFCAAISEYDQMLFEDETKNRMMETKELFDWVLKQRCFEKTSFILFLNKFD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain