SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156241

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene156241
CAGATTTCTGGATTTTTTTCTCTTGGAGACCCTCGCAGCAAAGATGGCGGCCGCACCCAAGATTCAGGTGGGAGACAAGATTCCCGAGGTTACTTTGACTGTGCTCGAGGAGGAGGGCAAGTCGGGCCGTCAGGTCAGCTCCGCCGAGCTCTTCAAGGGCAAGAATGTGCTCTTTGCCGTGCCCGGCGCCTTCACGCCCACCTGCTCCAACGATCACTGCCCCGGCTTCGTGTTGGGTGCGGCTCAGATCAAGAACAAGGGGTACAACACCTTTTGCGTGGCTGTGAACGATCCATTTGTGATGGATGCCTGGGCCAAGTCCCAGAAGGCGTATGGCAAGATCGTGTTCATCGCTGACGGAAACGCAACCTTCACCGACGCCGTTGGTTTGACTCTGGACGGCAGCAAGTTCGGTCTGGGCAAGCGTTGCCAGCGTTACGCCATGATCATCGAAG

Ace file of the UniGene sp_v3.0_unigene156241

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Antioxidant, AhpC/Tsa family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YRM6_9GAMM	-	-	9.0e-34	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Peroxiredoxin	-	-	5.772e-17	-

Source	Gene names
Sma3	CHLREDRAFT_157173; CHLREDRAFT_196639; GSVIVT00016713001; GSVIVT00021685001; LOC_Os01g48420; MICPUCDRAFT_19224; OJ1117_G01.9; Os01g0675100; OsI_03241; OsJ_002891; P0485G01.43; PHYPADRAFT_18048; PHYPADRAFT_180517; PHYPADRAFT_201361; POPTRDRAFT_288087; POPTR

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002325005.1	type II peroxiredoxin [Populus trichocarpa]	1.0e-34	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNX1

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 137 - 164

Fln protein: MAAAPKIQVGDKIPEVTLTVLEEEGKSGRQVSSAELFKGKNVLFAVPGAFTPTCSNDHCPGFVLGAAQIKNKGYNTFCVAVNDPFVMDAWAKSQKAYGKIVFIADGNATFTDAVGLTLDGSKFGLGKRCQRYAMIIE

Protein Length: 138

Fln nts: CAGATTTCTGGATTTTTTTCTCTTGGAGACCCTCGCAGCAAAG_-_ATGGCGGCCGCACCCAAGATTCAGGTGGGAGACAAGATTCCCGAGGTTACTTTGACTGTGCTCGAGGAGGAGGGCAAGTCGGGCCGTCAGGTCAGCTCCGCCGAGCTCTTCAAGGGCAAGAATGTGCTCTTTGCCGTGCCCGGCGCCTTCACGCCCACCTGCTCCAACGATCACTGCCCCGGCTTCGTGTTGGGTGCGGCTCAGATCAAGAACAAGGGGTACAACACCTTTTGCGTGGCTGTGAACGATCCATTTGTGATGGATGCCTGGGCCAAGTCCCAGAAGGCGTATGGCAAGATCGTGTTCATCGCTGACGGAAACGCAACCTTCACCGACGCCGTTGGTTTGACTCTGGACGGCAGCAAGTTCGGTCTGGGCAAGCGTTGCCAGCGTTACGCCATGATCATCGAAG

Fln Alignment:

HLKU4M004JEHYA___IQVGDKIPEVTLTVLEEEGKSGRQVSSAELFKGKNV-LFAVPGAFTPTCSNDHCPGFVLGAAQIKNKGYNTF-CVAVNDPFVMDAWAKSQKAYGKIVFIADGNATFTDAVGLTLDGSKFGLGKRCQRYAMIIE
A9NNX1________________IAVGDKIPDGVLAYFDEENKL-QQVSAHSLAAGKKIILFGVPGAFTPTCSMQHVPGFVEKAEELKGKGIDEIICISVNDPFVMKEWSKTYTNNKHVKFLADGSAKYTYALGLELDLSEKGLGIRSRRFALVCD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain