SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156207

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene156207
ACATGTAGATCAAGATACTAAAGCAAAGGGAGATAACGATCCTTTGGATGCTTGTGAGATTGGAAGTGTTACTGCAGTAAGAGGACAAATAAGACAAGTTAAAGTTTTGGGAACTTGGGCTATGATTGATGAAGGAGAAACTGATTGGAAAATCCTTTGCATTGATGTCAATGATCCTAAAGCAAGTCTTCTTAATTCTCTCGAGGATGTAGAGACTCATTTCCCTGGAGTTATTAATCAAACTTTTA

Ace file of the UniGene sp_v3.0_unigene156207

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Inorganic pyrophosphatase n=1 Tax=Dictyostelium fasciculatum RepID=F4PT49_9MYCE	-	-	4.0e-27	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Soluble inorganic pyrophosphatase 1, chloroplastic	-	-	3.681e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inorganic diphosphatase.	EC:3.6.1.1	-	3.24e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		3.24e-08	%

Source	Gene names
Sma3	At5g09650; CHLREDRAFT_133620; F17I14_160; GSVIVT00013522001; GSVIVT00015038001; IPY1; OJ1767_D02.15-1; OJ1767_D02.15-2; Os02g0768600; OsI_09082; OsJ_08520; PHYPADRAFT_154128; POPTRDRAFT_557583; POPTRDRAFT_707493; PPA; PPA1; RCOM_0816840; THAPSDRAFT_5188;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	inorganic diphosphatase activity	GO:0004427	Molecular Function	-
Sma3	phosphate-containing compound metabolic process	GO:0006796	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09650.1	AtPPa6, PPa6 pyrophosphorylase 6 chr5:2991331-2993117 REVERSE LENGTH=300	2.0e-21	56%
RefSeq	Arabidopsis thaliana	NP_196527.1	soluble inorganic pyrophosphatase 1 [Arabidopsis thaliana]	3.0e-21	56%
RefSeq	Populus trichocarpa	XP_002313207.1	predicted protein [Populus trichocarpa]	2.0e-21	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLE1

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 82 - 303

Fln protein: HVDQDTKAKGDNDPLDACEIGSVTAVRGQIRQVKVLGTWAMIDEGETDWKILCIDVNDPKASLLNSLEDVETHFPGVINQTF

Protein Length: 83

Fln nts: ACATGTAGATCAAGATACTAAAGCAAAGGGAGATAACGATCCTTTGGATGCTTGTGAGATTGGAAGTGTTACTGCAGTAAGAGGACAAATAAGACAAGTTAAAGTTTTGGGAACTTGGGCTATGATTGATGAAGGAGAAACTGATTGGAAAATCCTTTGCATTGATGTCAATGATCCTAAAGCAAGTCTTCTTAATTCTCTCGAGGATGTAGAGACTCATTTCCCTGGAGTTATTAATCAAACTTTTA

Fln Alignment:

HLKU4M004IMPM4___AKGDNDPLDACEIGSVTAVRGQIRQVKVLGTWAMIDEGETDWKILCIDVNDPKASLLNSLEDVETHFPGVI
A9NLE1________________AFGDNDPVDVVEIGERQAKMGEVLKVKPLAALAMIDEGELDWKIVAISVDDPRAPLVNDVNDVEKHFPGTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain